Click here to switch to the map view.

The map label for this gene is yccM [H]

Identifier: 124485426

GI number: 124485426

Start: 570594

End: 571889

Strand: Reverse

Name: yccM [H]

Synonym: Mlab_0601

Alternate gene names: 124485426

Gene position: 571889-570594 (Counterclockwise)

Preceding gene: 124485427

Following gene: 124485425

Centisome position: 31.68

GC content: 47.69

Gene sequence:

>1296_bases
ATGATTTCAAAAAAACTGCGAAGGTCCCTCCTCGTTGCGGGAGGTACAGCATTGCTTGCCGCGCCTGCGTGTGCTGCAGT
ATGTCCGAAAGGACATTCTGCTTGCCCGTATCCTGGAAGATGTTTCCTCTATACGGATGCCGACGGGAACTCTCTGTGCG
ATTACACGTCCGGGGATTCGGGCACGTCAGTAAGTGAAACTGACCAGATTACCATTTCCGGGAGTTCTACGGATACATCA
GCGACTACTCAGACAGATACCGGGAGTGATACGGTTTCATCCGTCATTTCAACCAGTTCGTCAACCGGCTCTGAAACCGT
ATCTTCCGGAGATTCAGGGTTAAGTCCGCTGGTATTTTCTGCTGCCGGACTTATACTCGGCGGTGCGGTTATTCTTCTCC
TCGCGATCGCAATGAAATATCTCAGAAAAGAAAAACCTGAGGTCCTGCAAAAAATATTCGTCTATGCCGGCATTTCCCCG
ATTTTACTTGGGCTTCTCATCGTCCTCTATGATCCGGAATTATTCGGGATTACGGGAACATTGGCTGATATGATCTCATC
CTACTCGGGAATTGTGTATATGTTTGGAGGCACACTTCTTGCTGCTGTTCTTTGGCTCAAAAACGCCATGTCAAAAGAAG
CGCTGATATCGATTTCCATCCTTACATCAGCGGCAGGCTTTTTGCTTATTATTCCCATCGCACCTGATGGATTCTCCTCA
ACGATATCCGGAATAATTGCGTTGTCATTTGCAGGTCTTGGCTTTGCGGGACTGGTCGCTTTGCTCGTGATCACATACTT
CTTCGGGCGTGTATTCTGCGCACACATGTGTCCGGCAGGAGTACTTCAGGAACTGTTATACCGCATTCCTGTGAAAAAAG
TGCAGATCAAAGACCGACGGATTCCAAAAACCATTAGGGCCGGCTTCTTTGCAGCTCTCGTAATTGGGGTGTTTTGTTCC
ATCGACATATTCGAATATATCGGGATATCGTCATTCTTTGCGCTCATGTTCACGGCAGCGGCTGGAGTGTTTCTTGTGAT
CCTCCTTGCTTCGGTATTCATTTATCGGCCGTTTTGTACGTTCCTGTGCCCGTACGGATGTATATTTTCCATAATCTCAC
GGTTTGGGAGGTTTGGCTTGAAAAGAACGGATAAATGTATCAACTGCAGAAAATGCGAGAAGATTTGCCCGACCGGAGAA
GCCGGCAGCGAGGCAAAAAAAGCAGAATGTTATCTCTGCGGGAAATGCATTGAGAAGTGCCCGGTTGAATCAGCCATCAT
TTACGGAAAAAGATGA

Upstream 100 bases:

>100_bases
ACACAAGTTTTGTTTTGTTTCCATATTGTAAAGTATATATTACATTATGTCATATGTATTAATCATAAAAAGGTCCCATT
GATAGGTATCTGGTGATTGT

Downstream 100 bases:

>100_bases
CAATAAAATTATTTTTTCATATAATTTTGATGTGGAATTAAGGATACAGTAGATCATTATTCAAATATTGCGGGATCAAG
AAATATGCAGTCCCTTTTTT

Product: aminoglycoside phosphotransferase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MISKKLRRSLLVAGGTALLAAPACAAVCPKGHSACPYPGRCFLYTDADGNSLCDYTSGDSGTSVSETDQITISGSSTDTS
ATTQTDTGSDTVSSVISTSSSTGSETVSSGDSGLSPLVFSAAGLILGGAVILLLAIAMKYLRKEKPEVLQKIFVYAGISP
ILLGLLIVLYDPELFGITGTLADMISSYSGIVYMFGGTLLAAVLWLKNAMSKEALISISILTSAAGFLLIIPIAPDGFSS
TISGIIALSFAGLGFAGLVALLVITYFFGRVFCAHMCPAGVLQELLYRIPVKKVQIKDRRIPKTIRAGFFAALVIGVFCS
IDIFEYIGISSFFALMFTAAAGVFLVILLASVFIYRPFCTFLCPYGCIFSIISRFGRFGLKRTDKCINCRKCEKICPTGE
AGSEAKKAECYLCGKCIEKCPVESAIIYGKR

Sequences:

>Translated_431_residues
MISKKLRRSLLVAGGTALLAAPACAAVCPKGHSACPYPGRCFLYTDADGNSLCDYTSGDSGTSVSETDQITISGSSTDTS
ATTQTDTGSDTVSSVISTSSSTGSETVSSGDSGLSPLVFSAAGLILGGAVILLLAIAMKYLRKEKPEVLQKIFVYAGISP
ILLGLLIVLYDPELFGITGTLADMISSYSGIVYMFGGTLLAAVLWLKNAMSKEALISISILTSAAGFLLIIPIAPDGFSS
TISGIIALSFAGLGFAGLVALLVITYFFGRVFCAHMCPAGVLQELLYRIPVKKVQIKDRRIPKTIRAGFFAALVIGVFCS
IDIFEYIGISSFFALMFTAAAGVFLVILLASVFIYRPFCTFLCPYGCIFSIISRFGRFGLKRTDKCINCRKCEKICPTGE
AGSEAKKAECYLCGKCIEKCPVESAIIYGKR
>Mature_431_residues
MISKKLRRSLLVAGGTALLAAPACAAVCPKGHSACPYPGRCFLYTDADGNSLCDYTSGDSGTSVSETDQITISGSSTDTS
ATTQTDTGSDTVSSVISTSSSTGSETVSSGDSGLSPLVFSAAGLILGGAVILLLAIAMKYLRKEKPEVLQKIFVYAGISP
ILLGLLIVLYDPELFGITGTLADMISSYSGIVYMFGGTLLAAVLWLKNAMSKEALISISILTSAAGFLLIIPIAPDGFSS
TISGIIALSFAGLGFAGLVALLVITYFFGRVFCAHMCPAGVLQELLYRIPVKKVQIKDRRIPKTIRAGFFAALVIGVFCS
IDIFEYIGISSFFALMFTAAAGVFLVILLASVFIYRPFCTFLCPYGCIFSIISRFGRFGLKRTDKCINCRKCEKICPTGE
AGSEAKKAECYLCGKCIEKCPVESAIIYGKR

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787226, Length=195, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45597; Mature: 45597

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKKLRRSLLVAGGTALLAAPACAAVCPKGHSACPYPGRCFLYTDADGNSLCDYTSGDS
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
GTSVSETDQITISGSSTDTSATTQTDTGSDTVSSVISTSSSTGSETVSSGDSGLSPLVFS
CCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHH
AAGLILGGAVILLLAIAMKYLRKEKPEVLQKIFVYAGISPILLGLLIVLYDPELFGITGT
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHH
LADMISSYSGIVYMFGGTLLAAVLWLKNAMSKEALISISILTSAAGFLLIIPIAPDGFSS
HHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECCCCHHH
TISGIIALSFAGLGFAGLVALLVITYFFGRVFCAHMCPAGVLQELLYRIPVKKVQIKDRR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEECCCC
IPKTIRAGFFAALVIGVFCSIDIFEYIGISSFFALMFTAAAGVFLVILLASVFIYRPFCT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLCPYGCIFSIISRFGRFGLKRTDKCINCRKCEKICPTGEAGSEAKKAECYLCGKCIEKC
HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
PVESAIIYGKR
CCCHHHCCCCC
>Mature Secondary Structure
MISKKLRRSLLVAGGTALLAAPACAAVCPKGHSACPYPGRCFLYTDADGNSLCDYTSGDS
CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
GTSVSETDQITISGSSTDTSATTQTDTGSDTVSSVISTSSSTGSETVSSGDSGLSPLVFS
CCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHH
AAGLILGGAVILLLAIAMKYLRKEKPEVLQKIFVYAGISPILLGLLIVLYDPELFGITGT
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHH
LADMISSYSGIVYMFGGTLLAAVLWLKNAMSKEALISISILTSAAGFLLIIPIAPDGFSS
HHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECCCCHHH
TISGIIALSFAGLGFAGLVALLVITYFFGRVFCAHMCPAGVLQELLYRIPVKKVQIKDRR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEECCCC
IPKTIRAGFFAALVIGVFCSIDIFEYIGISSFFALMFTAAAGVFLVILLASVFIYRPFCT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLCPYGCIFSIISRFGRFGLKRTDKCINCRKCEKICPTGEAGSEAKKAECYLCGKCIEKC
HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
PVESAIIYGKR
CCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]