Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is pykF [H]
Identifier: 124265483
GI number: 124265483
Start: 314322
End: 315758
Strand: Direct
Name: pykF [H]
Synonym: Mpe_A0290
Alternate gene names: 124265483
Gene position: 314322-315758 (Clockwise)
Preceding gene: 124265482
Following gene: 124265484
Centisome position: 7.77
GC content: 67.43
Gene sequence:
>1437_bases ATGACCATGCACCGCGCCACCAAGATCGTCGCCACCCTCGGCCCCGCCTCGTCCACGCCCGACGTGCTTGAACGCATGAT CACCGCCGGCGTCGACGTCGTCCGGCTGAACTTCTCGCACGGCAGCGCGCAGGACCACATCGCACGTGCCGCCCTGGTGC GCGAGGTGGCGCAGCGCGCCGGCAAGGAGGTCGCGATCATGGCCGATCTGCAAGGGCCGAAGATCCGTGTCGGCAAGTTC GCGCAGGGCAAGGTGATGCTGGAGCCTGGCGCGGCGTTCGTACTGGACGCCGCCCGCAGCGAGCCGGGCGACCTGCAGGC GGTCGGCCTGGACTACAAGTCGCTGCCGCGCGACGTGAAGCCGGGCGACACGCTGCTGCTCAACGACGGACTGATCGTGC TGACCGTCGACAAGGTGATCGGCGAGGCGGTGCACACCGTCGTGAAGATCGGCGGCGAGCTGTCCAACAACAAGGGCATC AACAAGCAGGGCGGCGGCCTCACGGCGCCGGCGCTGACCGCGAAGGACATGGAGGACATCAAGACCGCGATGAGCTTCCA GTGCGAGTACCTCGCGGTCAGCTTCCCCAAGAGCGCGACCGACATGGAGATGGCCCGGCAGCTGGCCAACGTGGCCGGTG AGCCGTGGCGTCACAAGCCGGCGCTGATCGCGAAGATCGAGCGCAGCGAGGCCATCCCCGTGCTCGAGCAGATCCTCAAG GCTAGCGACGGCATCATGGTGGCGCGCGGTGACCTCGCGGTCGAGGTCGGCAACGCCGCGGTGCCGGCGTTGCAGAAGAA GATGATCAAGCTCGCCCGGGAGCTCGACAAGGTGGTGATCACCGCGACCCAGATGATGGAGTCGATGATCGTCAACCCGG TGCCGACGCGCGCCGAGGTGAGCGACGTCGCGAATGCCGTGCTCGACGGCACCGATGCGGTGATGCTCAGCGCCGAGACA GCGGCCGGCAAGTACCCGGTCGAGACCATCGAACAGATGGCCGCCATCGCACTGGCAGCCGAACGGGCCGAGGACGTGGC GCTGGACGCCGACTTCACCAACAAGCGCTTCGGCCGCATCGACCAGAGCATCGCGATGGGTGCGCTGTTCACCGCCCACC ACCTGGGCTGCAAGGCGATCGTCGCGCTGACGGAATCGGGCTCGACGGCGCTGTGGATGAGCCGCCACAAGATCCACGTG CCGATCTTCGCGCTGACTTCGCAGCAGACCAGCCAGCGCAAGATGACGCTGTATCGCAACGTGCGTCCGCTGCTGATGCC GTCGTACACCGACCGCGACGAGGCCCTCGCGAAGGCGGAGGCGCTGCTGGTGGACGGTGGCGTGCTCAAGCCGGGAGACA CCTACGCCATCACGTGCGGCGAGCCGATGGGCTACCCGGGCGGTACCAACATGCTCAAGGTTTGCCGAGTCGCCTGA
Upstream 100 bases:
>100_bases CCTGCCGGCCTTCGAGATCCTCGAGCAGCGGGCCGCCGGCTGAGCGGCATGACGACACGGGGCGCTGCGGCGCCCCTCGC TTCATCGGAATCTTCTTCAC
Downstream 100 bases:
>100_bases GCAAGGGGGTCACGGACGGTCTCCGGCGCCGATCGGACGCCTAAAATCAGGGTTTCGCGGGCTCGCCGTCCGGCCTGCCG CTCCTTTCGCTGTCGACTTT
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 478; Mature: 477
Protein sequence:
>478_residues MTMHRATKIVATLGPASSTPDVLERMITAGVDVVRLNFSHGSAQDHIARAALVREVAQRAGKEVAIMADLQGPKIRVGKF AQGKVMLEPGAAFVLDAARSEPGDLQAVGLDYKSLPRDVKPGDTLLLNDGLIVLTVDKVIGEAVHTVVKIGGELSNNKGI NKQGGGLTAPALTAKDMEDIKTAMSFQCEYLAVSFPKSATDMEMARQLANVAGEPWRHKPALIAKIERSEAIPVLEQILK ASDGIMVARGDLAVEVGNAAVPALQKKMIKLARELDKVVITATQMMESMIVNPVPTRAEVSDVANAVLDGTDAVMLSAET AAGKYPVETIEQMAAIALAAERAEDVALDADFTNKRFGRIDQSIAMGALFTAHHLGCKAIVALTESGSTALWMSRHKIHV PIFALTSQQTSQRKMTLYRNVRPLLMPSYTDRDEALAKAEALLVDGGVLKPGDTYAITCGEPMGYPGGTNMLKVCRVA
Sequences:
>Translated_478_residues MTMHRATKIVATLGPASSTPDVLERMITAGVDVVRLNFSHGSAQDHIARAALVREVAQRAGKEVAIMADLQGPKIRVGKF AQGKVMLEPGAAFVLDAARSEPGDLQAVGLDYKSLPRDVKPGDTLLLNDGLIVLTVDKVIGEAVHTVVKIGGELSNNKGI NKQGGGLTAPALTAKDMEDIKTAMSFQCEYLAVSFPKSATDMEMARQLANVAGEPWRHKPALIAKIERSEAIPVLEQILK ASDGIMVARGDLAVEVGNAAVPALQKKMIKLARELDKVVITATQMMESMIVNPVPTRAEVSDVANAVLDGTDAVMLSAET AAGKYPVETIEQMAAIALAAERAEDVALDADFTNKRFGRIDQSIAMGALFTAHHLGCKAIVALTESGSTALWMSRHKIHV PIFALTSQQTSQRKMTLYRNVRPLLMPSYTDRDEALAKAEALLVDGGVLKPGDTYAITCGEPMGYPGGTNMLKVCRVA >Mature_477_residues TMHRATKIVATLGPASSTPDVLERMITAGVDVVRLNFSHGSAQDHIARAALVREVAQRAGKEVAIMADLQGPKIRVGKFA QGKVMLEPGAAFVLDAARSEPGDLQAVGLDYKSLPRDVKPGDTLLLNDGLIVLTVDKVIGEAVHTVVKIGGELSNNKGIN KQGGGLTAPALTAKDMEDIKTAMSFQCEYLAVSFPKSATDMEMARQLANVAGEPWRHKPALIAKIERSEAIPVLEQILKA SDGIMVARGDLAVEVGNAAVPALQKKMIKLARELDKVVITATQMMESMIVNPVPTRAEVSDVANAVLDGTDAVMLSAETA AGKYPVETIEQMAAIALAAERAEDVALDADFTNKRFGRIDQSIAMGALFTAHHLGCKAIVALTESGSTALWMSRHKIHVP IFALTSQQTSQRKMTLYRNVRPLLMPSYTDRDEALAKAEALLVDGGVLKPGDTYAITCGEPMGYPGGTNMLKVCRVA
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286422, Length=499, Percent_Identity=36.0721442885772, Blast_Score=262, Evalue=6e-70, Organism=Homo sapiens, GI33286420, Length=499, Percent_Identity=36.0721442885772, Blast_Score=262, Evalue=6e-70, Organism=Homo sapiens, GI32967597, Length=498, Percent_Identity=36.9477911646586, Blast_Score=260, Evalue=2e-69, Organism=Homo sapiens, GI10835121, Length=498, Percent_Identity=36.9477911646586, Blast_Score=260, Evalue=3e-69, Organism=Homo sapiens, GI33286418, Length=496, Percent_Identity=36.2903225806452, Blast_Score=259, Evalue=5e-69, Organism=Homo sapiens, GI310128732, Length=291, Percent_Identity=35.3951890034364, Blast_Score=155, Evalue=8e-38, Organism=Homo sapiens, GI310128730, Length=291, Percent_Identity=35.3951890034364, Blast_Score=155, Evalue=8e-38, Organism=Homo sapiens, GI310128736, Length=239, Percent_Identity=32.6359832635983, Blast_Score=122, Evalue=9e-28, Organism=Homo sapiens, GI310128734, Length=239, Percent_Identity=32.6359832635983, Blast_Score=122, Evalue=9e-28, Organism=Homo sapiens, GI310128738, Length=218, Percent_Identity=31.651376146789, Blast_Score=102, Evalue=6e-22, Organism=Escherichia coli, GI1788160, Length=478, Percent_Identity=51.255230125523, Blast_Score=446, Evalue=1e-126, Organism=Escherichia coli, GI1787965, Length=471, Percent_Identity=38.4288747346072, Blast_Score=294, Evalue=1e-80, Organism=Caenorhabditis elegans, GI17544584, Length=487, Percent_Identity=36.7556468172485, Blast_Score=268, Evalue=4e-72, Organism=Caenorhabditis elegans, GI71984413, Length=486, Percent_Identity=36.8312757201646, Blast_Score=238, Evalue=4e-63, Organism=Caenorhabditis elegans, GI71984406, Length=486, Percent_Identity=36.8312757201646, Blast_Score=238, Evalue=4e-63, Organism=Caenorhabditis elegans, GI17506829, Length=486, Percent_Identity=36.8312757201646, Blast_Score=238, Evalue=4e-63, Organism=Caenorhabditis elegans, GI17506831, Length=486, Percent_Identity=36.8312757201646, Blast_Score=238, Evalue=5e-63, Organism=Saccharomyces cerevisiae, GI6319279, Length=493, Percent_Identity=33.8742393509128, Blast_Score=245, Evalue=1e-65, Organism=Saccharomyces cerevisiae, GI6324923, Length=432, Percent_Identity=35.4166666666667, Blast_Score=233, Evalue=6e-62, Organism=Drosophila melanogaster, GI24648964, Length=493, Percent_Identity=36.7139959432049, Blast_Score=258, Evalue=8e-69, Organism=Drosophila melanogaster, GI28571814, Length=493, Percent_Identity=36.7139959432049, Blast_Score=257, Evalue=1e-68, Organism=Drosophila melanogaster, GI24648966, Length=413, Percent_Identity=37.2881355932203, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI24581235, Length=495, Percent_Identity=32.5252525252525, Blast_Score=224, Evalue=9e-59, Organism=Drosophila melanogaster, GI24646914, Length=274, Percent_Identity=35.7664233576642, Blast_Score=135, Evalue=8e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 50969; Mature: 50838
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMHRATKIVATLGPASSTPDVLERMITAGVDVVRLNFSHGSAQDHIARAALVREVAQRA CCCHHHHEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC GKEVAIMADLQGPKIRVGKFAQGKVMLEPGAAFVLDAARSEPGDLQAVGLDYKSLPRDVK CCEEEEEEECCCCEEEECCEECCEEEECCCCEEEEECCCCCCCCEEEECCCHHHCCCCCC PGDTLLLNDGLIVLTVDKVIGEAVHTVVKIGGELSNNKGINKQGGGLTAPALTAKDMEDI CCCEEEEECCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH KTAMSFQCEYLAVSFPKSATDMEMARQLANVAGEPWRHKPALIAKIERSEAIPVLEQILK HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEECCCCCCHHHHHHHH ASDGIMVARGDLAVEVGNAAVPALQKKMIKLARELDKVVITATQMMESMIVNPVPTRAEV CCCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH SDVANAVLDGTDAVMLSAETAAGKYPVETIEQMAAIALAAERAEDVALDADFTNKRFGRI HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH DQSIAMGALFTAHHLGCKAIVALTESGSTALWMSRHKIHVPIFALTSQQTSQRKMTLYRN HHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCEEEEEEEEECCCCCHHHHHHHHHC VRPLLMPSYTDRDEALAKAEALLVDGGVLKPGDTYAITCGEPMGYPGGTNMLKVCRVA CCCCCCCCCCCHHHHHHHHHEEEECCCEECCCCCEEEECCCCCCCCCCCCHHHHEECC >Mature Secondary Structure TMHRATKIVATLGPASSTPDVLERMITAGVDVVRLNFSHGSAQDHIARAALVREVAQRA CCHHHHEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC GKEVAIMADLQGPKIRVGKFAQGKVMLEPGAAFVLDAARSEPGDLQAVGLDYKSLPRDVK CCEEEEEEECCCCEEEECCEECCEEEECCCCEEEEECCCCCCCCEEEECCCHHHCCCCCC PGDTLLLNDGLIVLTVDKVIGEAVHTVVKIGGELSNNKGINKQGGGLTAPALTAKDMEDI CCCEEEEECCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH KTAMSFQCEYLAVSFPKSATDMEMARQLANVAGEPWRHKPALIAKIERSEAIPVLEQILK HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEECCCCCCHHHHHHHH ASDGIMVARGDLAVEVGNAAVPALQKKMIKLARELDKVVITATQMMESMIVNPVPTRAEV CCCCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH SDVANAVLDGTDAVMLSAETAAGKYPVETIEQMAAIALAAERAEDVALDADFTNKRFGRI HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH DQSIAMGALFTAHHLGCKAIVALTESGSTALWMSRHKIHVPIFALTSQQTSQRKMTLYRN HHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCEEEEEEEEECCCCCHHHHHHHHHC VRPLLMPSYTDRDEALAKAEALLVDGGVLKPGDTYAITCGEPMGYPGGTNMLKVCRVA CCCCCCCCCCCHHHHHHHHHEEEECCCEECCCCCEEEECCCCCCCCCCCCHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12522265 [H]