Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265440
Identifier: 124265440
GI number: 124265440
Start: 267827
End: 269464
Strand: Direct
Name: 124265440
Synonym: Mpe_A0247
Alternate gene names: NA
Gene position: 267827-269464 (Clockwise)
Preceding gene: 124265439
Following gene: 124265441
Centisome position: 6.62
GC content: 73.69
Gene sequence:
>1638_bases TTGGCCACCGATCCCTCGCCCCAGCGCGCCTACCGCGCCGCCTGCCCCAACTGCGGCGCGGCGGTCGAGTTCCGTTCGGC CGCGTCGGCGCTGGCCGTCTGCAGCTACTGCCGCAGCACGCTGCTGCGCGAGGGCGACGCGCTGCGGCGCATCGGCCAGA GTGCCGAGCTGTTCGACGACCACAGCCCGTTGCAGCTCGGCACCGCCGGGCGCTGGCAGGGCGCGGCGTTCACGCTGGTC GGCCGGCTGCAGGTGCGCTACGCGGGCGGCAGCTGGAACGAATGGCATGCGCTGTTCGACAGCGCCGACCCGACCGACGC CGCGCCGCGCTCCGGCTGGCTCAGCGAGGACAACGGGGGCTACGTCTTCGGCTTCGAGGCGCCGGCGCCACCCGAGGCCC TGCCGCCGCCCGAGGCGCTGCGCGTTGGCGCGCAGCAGGTGCTGGGCCGCGAGAGCTGGTCGGTCGCCAGCGTCACCACA GCCAGGCTGGGGGCCGCCGAGGGCGAGCTGCCCTTCGTGCCGATGCTGGAGCGCGCCTATGTCGTGGCCGAACTGCGCAA TGCGCGCGGCGAGGTCGCCAGCATCGACTACGGCCCGGCCAGCGAAGGCCGGCCGCCGCGCTGGTACGTCGGCCGCGGCC TGCAGCTCGCCGAGCTGACGCTGTCGGGCCTGCGCGAGGACGGCAGCACGCGCGATCTGAAGGGGCGCACGCTCGCCTGC CCGAGTTGCGGTGCGTCGGTGGCGGTGCAGCTCGACAGCACGCAGTCGATCGTCTGCGCGCAGTGCCATGCGGTGGTCGA TCTGGGCGCACCCGGCGCGCAGGGCGCGGGTGCCGACCTGAAGCACTACGCCCAGGACACCCCGGGCGCCACCGGCGGCG AGCCGCTGATCGCGCTGGGCCGCAGCGGCACGCTGACCCTCGGCGCTGGCGGGCCGCTCCCCTGGCAGGTGGTCGGCTAC GTCGAGCGCTGCACGCTGCCCGAGGCCGGCGACGACGAGCAGAGCTTCTGGCGCGAGTACCTGCTCTACAACCGCCAGGC CGGCTTCGCCTTCCTGGTCGATGCCGAGGACGGCTGGAGCTGGGTGCGGCCGCTGACCGGCGCGCCGCAGGTCAGCGGCG CCACCGCCCGCTGGCAGGGCGACAGCTACCGCGAGCTCTACCGCTACAGCGGCCAGATCACCTACGTGCTCGGCGAGTTC TACTGGCGGCTGGCGCGCGGCGAGCGCACCCGCAACACCGATTACCGCGGCCCCGGCGGCAAGCAGCTCAACCGCGAGCA GACCGGCGAGGGCGGTGACGCCGAGGTCACCTGGTCGGCCGGCGCGGCGCTCGACGCCGACGTGCTGTTCAAGGCCTTCA AGCTCGACGACGGCCAGCGCGCCGCGCTGCAGCGCGACGCCAAGCCGGTGTCGACAAAGGGCTTCGGCGGCATGGCCGGG CTGTTCCTCTTCCTGCTGTTCGTCGTGGTCGTCTTCTCGATGGTGCGTTGCGGCCGCGACGACTGCAGCGAGCTGCGCCG CACCTACGGCGAGGCCAGCAACGAATACCAGAGTTGCGCGCGCAACAGCGGCAGCGGCGTGCGCAGCTCGGGCGGGTCCT ACGGCGGTTTCAGCACCGGTGGCGGCGGGCACAAGTAA
Upstream 100 bases:
>100_bases AAGGGCATCCTCACCGACGAGGAGTTCGCGGCGAAGAAGGCCGAGCTGCTGAAGAAGCTGGTGTGAGGTGATGGCGGGCC CTGACTCACACGGCTGAGCC
Downstream 100 bases:
>100_bases GCTGCCCTCGATTCATCAACACAGGAGCGACGCATCATGATGGGTATGGAGTGGCTGAGGCCAGGGGTCTTCTTCGGCTC GATCCTGTTCGCGCTGATCG
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Protein
Number of amino acids: Translated: 545; Mature: 544
Protein sequence:
>545_residues MATDPSPQRAYRAACPNCGAAVEFRSAASALAVCSYCRSTLLREGDALRRIGQSAELFDDHSPLQLGTAGRWQGAAFTLV GRLQVRYAGGSWNEWHALFDSADPTDAAPRSGWLSEDNGGYVFGFEAPAPPEALPPPEALRVGAQQVLGRESWSVASVTT ARLGAAEGELPFVPMLERAYVVAELRNARGEVASIDYGPASEGRPPRWYVGRGLQLAELTLSGLREDGSTRDLKGRTLAC PSCGASVAVQLDSTQSIVCAQCHAVVDLGAPGAQGAGADLKHYAQDTPGATGGEPLIALGRSGTLTLGAGGPLPWQVVGY VERCTLPEAGDDEQSFWREYLLYNRQAGFAFLVDAEDGWSWVRPLTGAPQVSGATARWQGDSYRELYRYSGQITYVLGEF YWRLARGERTRNTDYRGPGGKQLNREQTGEGGDAEVTWSAGAALDADVLFKAFKLDDGQRAALQRDAKPVSTKGFGGMAG LFLFLLFVVVVFSMVRCGRDDCSELRRTYGEASNEYQSCARNSGSGVRSSGGSYGGFSTGGGGHK
Sequences:
>Translated_545_residues MATDPSPQRAYRAACPNCGAAVEFRSAASALAVCSYCRSTLLREGDALRRIGQSAELFDDHSPLQLGTAGRWQGAAFTLV GRLQVRYAGGSWNEWHALFDSADPTDAAPRSGWLSEDNGGYVFGFEAPAPPEALPPPEALRVGAQQVLGRESWSVASVTT ARLGAAEGELPFVPMLERAYVVAELRNARGEVASIDYGPASEGRPPRWYVGRGLQLAELTLSGLREDGSTRDLKGRTLAC PSCGASVAVQLDSTQSIVCAQCHAVVDLGAPGAQGAGADLKHYAQDTPGATGGEPLIALGRSGTLTLGAGGPLPWQVVGY VERCTLPEAGDDEQSFWREYLLYNRQAGFAFLVDAEDGWSWVRPLTGAPQVSGATARWQGDSYRELYRYSGQITYVLGEF YWRLARGERTRNTDYRGPGGKQLNREQTGEGGDAEVTWSAGAALDADVLFKAFKLDDGQRAALQRDAKPVSTKGFGGMAG LFLFLLFVVVVFSMVRCGRDDCSELRRTYGEASNEYQSCARNSGSGVRSSGGSYGGFSTGGGGHK >Mature_544_residues ATDPSPQRAYRAACPNCGAAVEFRSAASALAVCSYCRSTLLREGDALRRIGQSAELFDDHSPLQLGTAGRWQGAAFTLVG RLQVRYAGGSWNEWHALFDSADPTDAAPRSGWLSEDNGGYVFGFEAPAPPEALPPPEALRVGAQQVLGRESWSVASVTTA RLGAAEGELPFVPMLERAYVVAELRNARGEVASIDYGPASEGRPPRWYVGRGLQLAELTLSGLREDGSTRDLKGRTLACP SCGASVAVQLDSTQSIVCAQCHAVVDLGAPGAQGAGADLKHYAQDTPGATGGEPLIALGRSGTLTLGAGGPLPWQVVGYV ERCTLPEAGDDEQSFWREYLLYNRQAGFAFLVDAEDGWSWVRPLTGAPQVSGATARWQGDSYRELYRYSGQITYVLGEFY WRLARGERTRNTDYRGPGGKQLNREQTGEGGDAEVTWSAGAALDADVLFKAFKLDDGQRAALQRDAKPVSTKGFGGMAGL FLFLLFVVVVFSMVRCGRDDCSELRRTYGEASNEYQSCARNSGSGVRSSGGSYGGFSTGGGGHK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58151; Mature: 58020
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATDPSPQRAYRAACPNCGAAVEFRSAASALAVCSYCRSTLLREGDALRRIGQSAELFDD CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCC HSPLQLGTAGRWQGAAFTLVGRLQVRYAGGSWNEWHALFDSADPTDAAPRSGWLSEDNGG CCCEEECCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC YVFGFEAPAPPEALPPPEALRVGAQQVLGRESWSVASVTTARLGAAEGELPFVPMLERAY EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH VVAELRNARGEVASIDYGPASEGRPPRWYVGRGLQLAELTLSGLREDGSTRDLKGRTLAC HHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEC PSCGASVAVQLDSTQSIVCAQCHAVVDLGAPGAQGAGADLKHYAQDTPGATGGEPLIALG CCCCCEEEEEECCCCCHHHHHHHHHEECCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEC RSGTLTLGAGGPLPWQVVGYVERCTLPEAGDDEQSFWREYLLYNRQAGFAFLVDAEDGWS CCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCH WVRPLTGAPQVSGATARWQGDSYRELYRYSGQITYVLGEFYWRLARGERTRNTDYRGPGG HHCCCCCCCCCCCCEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCC KQLNREQTGEGGDAEVTWSAGAALDADVLFKAFKLDDGQRAALQRDAKPVSTKGFGGMAG CCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHH LFLFLLFVVVVFSMVRCGRDDCSELRRTYGEASNEYQSCARNSGSGVRSSGGSYGGFSTG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC GGGHK CCCCC >Mature Secondary Structure ATDPSPQRAYRAACPNCGAAVEFRSAASALAVCSYCRSTLLREGDALRRIGQSAELFDD CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCC HSPLQLGTAGRWQGAAFTLVGRLQVRYAGGSWNEWHALFDSADPTDAAPRSGWLSEDNGG CCCEEECCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC YVFGFEAPAPPEALPPPEALRVGAQQVLGRESWSVASVTTARLGAAEGELPFVPMLERAY EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH VVAELRNARGEVASIDYGPASEGRPPRWYVGRGLQLAELTLSGLREDGSTRDLKGRTLAC HHHHHHHCCCCEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEC PSCGASVAVQLDSTQSIVCAQCHAVVDLGAPGAQGAGADLKHYAQDTPGATGGEPLIALG CCCCCEEEEEECCCCCHHHHHHHHHEECCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEC RSGTLTLGAGGPLPWQVVGYVERCTLPEAGDDEQSFWREYLLYNRQAGFAFLVDAEDGWS CCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCH WVRPLTGAPQVSGATARWQGDSYRELYRYSGQITYVLGEFYWRLARGERTRNTDYRGPGG HHCCCCCCCCCCCCEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCC KQLNREQTGEGGDAEVTWSAGAALDADVLFKAFKLDDGQRAALQRDAKPVSTKGFGGMAG CCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHH LFLFLLFVVVVFSMVRCGRDDCSELRRTYGEASNEYQSCARNSGSGVRSSGGSYGGFSTG HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC GGGHK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA