Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
---|---|
Accession | NC_008825 |
Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is ycfJ [C]
Identifier: 124265362
GI number: 124265362
Start: 182273
End: 182851
Strand: Direct
Name: ycfJ [C]
Synonym: Mpe_A0169
Alternate gene names: 124265362
Gene position: 182273-182851 (Clockwise)
Preceding gene: 124265361
Following gene: 124265364
Centisome position: 4.51
GC content: 73.06
Gene sequence:
>579_bases ATGGAAGCAGCATCCCGAACATCTGACAAAACTGCCGGCGGCCTGCCGCGCTGGATGTGGCTGGCCGGTGGCGCGGTCGC GCTGACCATTGCCGGAGTCGCCAGTGCGCTGGCCCTGCAGCAGCGCGCGCAGCCGGCATCTGCCGCGGCGGCGGTCGCGC CCGTTGAAGAGATCGTGTCGCCCGCGCCCAAGCCCTCGCGCGGCGTGACCGCCGGCCAGCCGGCTGGCCATGCGTCACCG GCAGCGGCGGCCTGCGCGCAGTGCGGCGTGGTCGAGTCGGTGCAGGCGGTGAAGGTCAAGGGCGAGGCCAGCGGCGTTGG CGCGGTCGCCGGCGGCGTGCTCGGTGGCGTGGTCGGCAACCAGTTCGGCGGCGGCAACGGTCGTACCGCGATGACGGTGC TCGGTGCGGTGGGCGGTGGCGTGGCCGGTCACGAGATCGAGAAGAACGTGAAGGCGAAGACGGTCTACAGCGTGCGCGTG CGCATGGACGACGGCAGCCTGCGCACGCTGCAGCAGTCGCAGGCGCCGGCGGTCGGTGCGCGGGTCAAGGTCGACGGAAC GACGCTGCGCGCCGCCTGA
Upstream 100 bases:
>100_bases AAGGCGCTGTTTAACGGCGCCTTACATCTGATGCATTCGCCGCTGCAACGCGGCGCGGTGGCTCGTGTCCAATCGGTCGC CCGAAGGAGGACGATCGATC
Downstream 100 bases:
>100_bases GCGCGCGCGTCGAGTCAAAGGGCCCGTTCGTTCAGCCTGCCGCCAGCACGCGGCGGTACTGGATCGCCTCGGCCACGTGG CCGACACCGATGTGCTCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVSPAPKPSRGVTAGQPAGHASP AAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGNQFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRV RMDDGSLRTLQQSQAPAVGARVKVDGTTLRAA
Sequences:
>Translated_192_residues MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVSPAPKPSRGVTAGQPAGHASP AAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGNQFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRV RMDDGSLRTLQQSQAPAVGARVKVDGTTLRAA >Mature_192_residues MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVSPAPKPSRGVTAGQPAGHASP AAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGNQFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRV RMDDGSLRTLQQSQAPAVGARVKVDGTTLRAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18686; Mature: 18686
Theoretical pI: Translated: 10.61; Mature: 10.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVS CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC PAPKPSRGVTAGQPAGHASPAAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGN CCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHCC QFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRVRMDDGSLRTLQQSQAPAVGA CCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEEEEEEEEECCCCHHHHHHHCCCCCCC RVKVDGTTLRAA EEEECCEEECCC >Mature Secondary Structure MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVS CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC PAPKPSRGVTAGQPAGHASPAAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGN CCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHCC QFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRVRMDDGSLRTLQQSQAPAVGA CCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEEEEEEEEECCCCHHHHHHHCCCCCCC RVKVDGTTLRAA EEEECCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA