Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is ycfJ [C]

Identifier: 124265362

GI number: 124265362

Start: 182273

End: 182851

Strand: Direct

Name: ycfJ [C]

Synonym: Mpe_A0169

Alternate gene names: 124265362

Gene position: 182273-182851 (Clockwise)

Preceding gene: 124265361

Following gene: 124265364

Centisome position: 4.51

GC content: 73.06

Gene sequence:

>579_bases
ATGGAAGCAGCATCCCGAACATCTGACAAAACTGCCGGCGGCCTGCCGCGCTGGATGTGGCTGGCCGGTGGCGCGGTCGC
GCTGACCATTGCCGGAGTCGCCAGTGCGCTGGCCCTGCAGCAGCGCGCGCAGCCGGCATCTGCCGCGGCGGCGGTCGCGC
CCGTTGAAGAGATCGTGTCGCCCGCGCCCAAGCCCTCGCGCGGCGTGACCGCCGGCCAGCCGGCTGGCCATGCGTCACCG
GCAGCGGCGGCCTGCGCGCAGTGCGGCGTGGTCGAGTCGGTGCAGGCGGTGAAGGTCAAGGGCGAGGCCAGCGGCGTTGG
CGCGGTCGCCGGCGGCGTGCTCGGTGGCGTGGTCGGCAACCAGTTCGGCGGCGGCAACGGTCGTACCGCGATGACGGTGC
TCGGTGCGGTGGGCGGTGGCGTGGCCGGTCACGAGATCGAGAAGAACGTGAAGGCGAAGACGGTCTACAGCGTGCGCGTG
CGCATGGACGACGGCAGCCTGCGCACGCTGCAGCAGTCGCAGGCGCCGGCGGTCGGTGCGCGGGTCAAGGTCGACGGAAC
GACGCTGCGCGCCGCCTGA

Upstream 100 bases:

>100_bases
AAGGCGCTGTTTAACGGCGCCTTACATCTGATGCATTCGCCGCTGCAACGCGGCGCGGTGGCTCGTGTCCAATCGGTCGC
CCGAAGGAGGACGATCGATC

Downstream 100 bases:

>100_bases
GCGCGCGCGTCGAGTCAAAGGGCCCGTTCGTTCAGCCTGCCGCCAGCACGCGGCGGTACTGGATCGCCTCGGCCACGTGG
CCGACACCGATGTGCTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVSPAPKPSRGVTAGQPAGHASP
AAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGNQFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRV
RMDDGSLRTLQQSQAPAVGARVKVDGTTLRAA

Sequences:

>Translated_192_residues
MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVSPAPKPSRGVTAGQPAGHASP
AAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGNQFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRV
RMDDGSLRTLQQSQAPAVGARVKVDGTTLRAA
>Mature_192_residues
MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVSPAPKPSRGVTAGQPAGHASP
AAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGNQFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRV
RMDDGSLRTLQQSQAPAVGARVKVDGTTLRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18686; Mature: 18686

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVS
CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
PAPKPSRGVTAGQPAGHASPAAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGN
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHCC
QFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRVRMDDGSLRTLQQSQAPAVGA
CCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEEEEEEEEECCCCHHHHHHHCCCCCCC
RVKVDGTTLRAA
EEEECCEEECCC
>Mature Secondary Structure
MEAASRTSDKTAGGLPRWMWLAGGAVALTIAGVASALALQQRAQPASAAAAVAPVEEIVS
CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
PAPKPSRGVTAGQPAGHASPAAAACAQCGVVESVQAVKVKGEASGVGAVAGGVLGGVVGN
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHCC
QFGGGNGRTAMTVLGAVGGGVAGHEIEKNVKAKTVYSVRVRMDDGSLRTLQQSQAPAVGA
CCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEEEEEEEEECCCCHHHHHHHCCCCCCC
RVKVDGTTLRAA
EEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA