Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
---|---|
Accession | NC_008825 |
Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is cysW [H]
Identifier: 124265318
GI number: 124265318
Start: 127548
End: 128462
Strand: Direct
Name: cysW [H]
Synonym: Mpe_A0125
Alternate gene names: 124265318
Gene position: 127548-128462 (Clockwise)
Preceding gene: 124265317
Following gene: 124265319
Centisome position: 3.15
GC content: 67.1
Gene sequence:
>915_bases ATGACGACCGGCGCCACGCTGGCCCTGAAGGCCGCTGCACCCGCTGCGGCGGTCGCTCCGACGAACCTGCGCAACGCCAC CTCGGAGGCGCCCTGGGTGCGCCGCACGCTGATCGGCATCGCGCTGGTGTTCCTGACGGTGTTCCTGTTCGTGCCGCTGT TCGCGGTGTTCTACGAGGCGCTGAAGAAGGGCTGGGATGTCTATCTCGCGGCGATCGTCGAGCCCGACGCGCTGTCGGCC ATCCGGCTCACGCTGCTGGCGGCAGCGGTGTCGCTGCCGCTGAACCTGGTGTTCGGCGTGGCGGCGGCCTGGTGTATCGC CAAGTTCAACTTCCGCGGCAAGAACATCCTGCTGACGCTGATCGACCTGCCGTTCTCGGTGAGCCCGGTGATCGCCGGCC TGATCTTCGTGCTGGTGTTCGGCCTGCAGGGCTGGCTGGGCGGCTGGCTGCGCGAGCACGACCTGAAGATCATCTTCGCG CTGCCTGGCATCGTGCTGGCCACGGTGTTCATCACCTTCCCGTTCATCGCGCGCGAGCTGATCCCGCTGATGCAGGCGCA GGGCGTCGAGCAGGAAGAGGCGGCGCGCGTGCTGGGCGCTTCGGGCTGGCAGATCTTCTGGCGCGTGACGCTGCCCAACA TCAAGTGGGCGCTGCTGTATGGCGTGATCCTGTGCAATGCGCGGGCGATGGGGGAGTTCGGCGCGGTGTCGGTGGTCTCG GGCCACATCCGCGGCCAGACCAACACGATGCCGCTGCACATCGAGATCCTCTACAACGAATACCAGTTCGCGGCGTCGTT CGCGGTGGCTTCGCTGCTGGCCGGGCTGGCGCTGGTGACGCTGGTGCTGAAGTACCTGGTGGAGCGACGGGTGAGAAACC AGATCAAGGGCGCGAGCGCGCTGGAGGCCGTATGA
Upstream 100 bases:
>100_bases ACCGCGATCGCGGTCGTGATGCTGGTGTCGAGCTTCGTGCTGCTGCTGGGCATCAACCTGCTGCAGGCCTGGTCGCGCCG TCGCCAGGGAGGAAACTGAC
Downstream 100 bases:
>100_bases GCATCGAAGTCCGTAACCTGAACAAGCGCTTCGGCCCCACCGTCGTCTGCGACGACATCTCGATCGACATCCCCTCGGGC GAGCTGGTCGCGCTGCTCGG
Product: ABC type transporter
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MTTGATLALKAAAPAAAVAPTNLRNATSEAPWVRRTLIGIALVFLTVFLFVPLFAVFYEALKKGWDVYLAAIVEPDALSA IRLTLLAAAVSLPLNLVFGVAAAWCIAKFNFRGKNILLTLIDLPFSVSPVIAGLIFVLVFGLQGWLGGWLREHDLKIIFA LPGIVLATVFITFPFIARELIPLMQAQGVEQEEAARVLGASGWQIFWRVTLPNIKWALLYGVILCNARAMGEFGAVSVVS GHIRGQTNTMPLHIEILYNEYQFAASFAVASLLAGLALVTLVLKYLVERRVRNQIKGASALEAV
Sequences:
>Translated_304_residues MTTGATLALKAAAPAAAVAPTNLRNATSEAPWVRRTLIGIALVFLTVFLFVPLFAVFYEALKKGWDVYLAAIVEPDALSA IRLTLLAAAVSLPLNLVFGVAAAWCIAKFNFRGKNILLTLIDLPFSVSPVIAGLIFVLVFGLQGWLGGWLREHDLKIIFA LPGIVLATVFITFPFIARELIPLMQAQGVEQEEAARVLGASGWQIFWRVTLPNIKWALLYGVILCNARAMGEFGAVSVVS GHIRGQTNTMPLHIEILYNEYQFAASFAVASLLAGLALVTLVLKYLVERRVRNQIKGASALEAV >Mature_303_residues TTGATLALKAAAPAAAVAPTNLRNATSEAPWVRRTLIGIALVFLTVFLFVPLFAVFYEALKKGWDVYLAAIVEPDALSAI RLTLLAAAVSLPLNLVFGVAAAWCIAKFNFRGKNILLTLIDLPFSVSPVIAGLIFVLVFGLQGWLGGWLREHDLKIIFAL PGIVLATVFITFPFIARELIPLMQAQGVEQEEAARVLGASGWQIFWRVTLPNIKWALLYGVILCNARAMGEFGAVSVVSG HIRGQTNTMPLHIEILYNEYQFAASFAVASLLAGLALVTLVLKYLVERRVRNQIKGASALEAV
Specific function: Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4208
COG function: function code P; ABC-type sulfate transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI87082099, Length=271, Percent_Identity=52.7675276752767, Blast_Score=295, Evalue=2e-81, Organism=Escherichia coli, GI1788764, Length=212, Percent_Identity=37.2641509433962, Blast_Score=154, Evalue=8e-39, Organism=Escherichia coli, GI1786980, Length=227, Percent_Identity=29.0748898678414, Blast_Score=86, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011866 - InterPro: IPR005667 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 32945; Mature: 32813
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: PS00656 GLYCOSYL_HYDROL_F6_2 ; PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGATLALKAAAPAAAVAPTNLRNATSEAPWVRRTLIGIALVFLTVFLFVPLFAVFYEA CCCCCEEEEECCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKKGWDVYLAAIVEPDALSAIRLTLLAAAVSLPLNLVFGVAAAWCIAKFNFRGKNILLTL HHCCHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE IDLPFSVSPVIAGLIFVLVFGLQGWLGGWLREHDLKIIFALPGIVLATVFITFPFIAREL ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHH IPLMQAQGVEQEEAARVLGASGWQIFWRVTLPNIKWALLYGVILCNARAMGEFGAVSVVS HHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCHHCCCCCCHHHEE GHIRGQTNTMPLHIEILYNEYQFAASFAVASLLAGLALVTLVLKYLVERRVRNQIKGASA CCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LEAV HCCC >Mature Secondary Structure TTGATLALKAAAPAAAVAPTNLRNATSEAPWVRRTLIGIALVFLTVFLFVPLFAVFYEA CCCCEEEEECCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKKGWDVYLAAIVEPDALSAIRLTLLAAAVSLPLNLVFGVAAAWCIAKFNFRGKNILLTL HHCCHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE IDLPFSVSPVIAGLIFVLVFGLQGWLGGWLREHDLKIIFALPGIVLATVFITFPFIAREL ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHH IPLMQAQGVEQEEAARVLGASGWQIFWRVTLPNIKWALLYGVILCNARAMGEFGAVSVVS HHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCHHCCCCCCHHHEE GHIRGQTNTMPLHIEILYNEYQFAASFAVASLLAGLALVTLVLKYLVERRVRNQIKGASA CCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH LEAV HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]