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The map label for this gene is yhdW [H]

Identifier: 124027683

GI number: 124027683

Start: 801190

End: 801927

Strand: Reverse

Name: yhdW [H]

Synonym: Hbut_0805

Alternate gene names: 124027683

Gene position: 801927-801190 (Counterclockwise)

Preceding gene: 124027684

Following gene: 124027681

Centisome position: 48.1

GC content: 53.79

Gene sequence:

>738_bases
GTGAACCTTGTTCTTGAACGGTTGTCGCGTAAGCCTTTCGCAGTTGTGGGTCATCGTGGTGCAGCTGGCCTAGCCCCCGA
GAACACAATTACTGCACTCAGAAAGGCTATAGAAGCTGGTGCAGACATAGCTGAGTTTGATGTGCAGCGAACCGGTGACG
GTGTGCTAGTAGCTAGTCATGATCCAGTCGTAAAACATGGCGGGGGAATTCTCGATATACGTTCGGCTAGCTACGAGGAG
GTTAGAAGGGTAGAGCTGCCCGGTGGCGAGTACGTGCCAAGGATTGAGGAGCTGCTGGCTGAGGCTCGCGGAAGGATAGC
GTTATTCCTAGAGGTGAAGGAGCCCAGTGATACTCACACTCTAATAGACCTTATTTTGTCCGAAACGGCAGAGGATTATG
TAGCCATCATAAGCTTCCACGAGGAAGTGGTGAAGACTGTTAAGAGCCGGGCGTCCCGCATCCCAGCCGGTATCATCTAC
TTCAAGCCGCCAGGAAAGATTGTTGAGTGTCGACGGCTCCGCTGCGAGTTAGTATTGCCACGCTACCCCCTAGCAACTGC
CAAGGCTGTATCCTTTGCCCACCGGCTCGGGCTACGTGTGGTAGCGTGGACAGTTAATGAGCCAAACCTGGTAGTAGAGC
TTGCCAGACGCGGCGTTGACGGAATAGCGACCGACTATCCCGACATGGCTGTAGTTATACGCTCAAAACTTGCCCAAGGC
TCAGCGAAGGGGGGTTAA

Upstream 100 bases:

>100_bases
AATGCATGTAGAGAAGCCGCCAAGTAGGCTAGAGGATGTGGCACAGCTCGAAGACTACATAGAGGTAGTTAGGCCCGTCT
GCAGGAGAGAGGGGTAGGCC

Downstream 100 bases:

>100_bases
CTGCATCGCCCCTGCTTCCTCGGGGCTCTGCAACCAGGCAGCTGCTCATCATAGCCCCTGGGGATAGTTAGGCTCTTTAG
GGCCCCGCCTATAGGCCTAT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNLVLERLSRKPFAVVGHRGAAGLAPENTITALRKAIEAGADIAEFDVQRTGDGVLVASHDPVVKHGGGILDIRSASYEE
VRRVELPGGEYVPRIEELLAEARGRIALFLEVKEPSDTHTLIDLILSETAEDYVAIISFHEEVVKTVKSRASRIPAGIIY
FKPPGKIVECRRLRCELVLPRYPLATAKAVSFAHRLGLRVVAWTVNEPNLVVELARRGVDGIATDYPDMAVVIRSKLAQG
SAKGG

Sequences:

>Translated_245_residues
MNLVLERLSRKPFAVVGHRGAAGLAPENTITALRKAIEAGADIAEFDVQRTGDGVLVASHDPVVKHGGGILDIRSASYEE
VRRVELPGGEYVPRIEELLAEARGRIALFLEVKEPSDTHTLIDLILSETAEDYVAIISFHEEVVKTVKSRASRIPAGIIY
FKPPGKIVECRRLRCELVLPRYPLATAKAVSFAHRLGLRVVAWTVNEPNLVVELARRGVDGIATDYPDMAVVIRSKLAQG
SAKGG
>Mature_245_residues
MNLVLERLSRKPFAVVGHRGAAGLAPENTITALRKAIEAGADIAEFDVQRTGDGVLVASHDPVVKHGGGILDIRSASYEE
VRRVELPGGEYVPRIEELLAEARGRIALFLEVKEPSDTHTLIDLILSETAEDYVAIISFHEEVVKTVKSRASRIPAGIIY
FKPPGKIVECRRLRCELVLPRYPLATAKAVSFAHRLGLRVVAWTVNEPNLVVELARRGVDGIATDYPDMAVVIRSKLAQG
SAKGG

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=242, Percent_Identity=26.4462809917355, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26660; Mature: 26660

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLVLERLSRKPFAVVGHRGAAGLAPENTITALRKAIEAGADIAEFDVQRTGDGVLVASH
CCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHEECCCEEEEECC
DPVVKHGGGILDIRSASYEEVRRVELPGGEYVPRIEELLAEARGRIALFLEVKEPSDTHT
CCHHHCCCCEEEECCCCHHHHHEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHH
LIDLILSETAEDYVAIISFHEEVVKTVKSRASRIPAGIIYFKPPGKIVECRRLRCELVLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEECC
RYPLATAKAVSFAHRLGLRVVAWTVNEPNLVVELARRGVDGIATDYPDMAVVIRSKLAQG
CCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
SAKGG
CCCCC
>Mature Secondary Structure
MNLVLERLSRKPFAVVGHRGAAGLAPENTITALRKAIEAGADIAEFDVQRTGDGVLVASH
CCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHEECCCEEEEECC
DPVVKHGGGILDIRSASYEEVRRVELPGGEYVPRIEELLAEARGRIALFLEVKEPSDTHT
CCHHHCCCCEEEECCCCHHHHHEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHH
LIDLILSETAEDYVAIISFHEEVVKTVKSRASRIPAGIIYFKPPGKIVECRRLRCELVLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEECC
RYPLATAKAVSFAHRLGLRVVAWTVNEPNLVVELARRGVDGIATDYPDMAVVIRSKLAQG
CCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
SAKGG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]