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The map label for this gene is yciO [C]

Identifier: 124027648

GI number: 124027648

Start: 764984

End: 765628

Strand: Reverse

Name: yciO [C]

Synonym: Hbut_0770

Alternate gene names: 124027648

Gene position: 765628-764984 (Counterclockwise)

Preceding gene: 124027653

Following gene: 124027647

Centisome position: 45.92

GC content: 59.07

Gene sequence:

>645_bases
TTGTCCAGCTGGTGTACGCCTCGTGCGGCAGCTGCTACGATGGCAGCAATCCGGGTTGCAGCTAGGATTGTAGCCCTGGG
AGGCCTCGTAGTTTACCCTACCGACACCGTGTACGGCCTCGGCGCCAACCCCTTTAGCAGCTATGCCGTGTGGAGGGTTT
TCCGTGCGAAAGAGAGGCCTTCAAACAGGCCAATACCGGTCCTGGTCTCCAGCCTAAGGGCTGCCGAGAAGATAGCCGAG
CTAGACGATAGGGCTCGAAGGCTCGCCGAGAGATTCTGGCCCGGTCCACTAACCATAGTCGTACCGGCAAAACCAGGGCT
TCCCAGCCTACTACATGCGGGAACCGGGAGGATCGGTGTGCGTGTGCCAAACCACCCCATAGCGCTGAAGTTCATAGAGG
CCGTCGGGGGAGCAATCACTGGCACAAGTGCAAACCTCCACCGTAAACCCTCACCTTGCACTGTGCAGGAGGCAATGAAG
CAACTAGGCTGCCGCGTAGACATATACCTAGACGGTGGCCCCACCCCCGGGGGTACGCCGTCAACAGTAGTAGACCTCAC
AACACCCAAGCCGAGACTGGTGAGAAGAGGCCCAATACCTCCAGAGGAGATCGAGGCAGTCCTAGCTACACCCATCGAAG
CCTAG

Upstream 100 bases:

>100_bases
TATAAACAATACAAACAATATAAATGTGTCAATGGGGAGGTATGGTGGCGAGTAGAGATAACTGCCCTGGAGCCCCAAGA
ACCCCTTGGGGGTGCTCAGG

Downstream 100 bases:

>100_bases
GATGGGGCTCGGCAAACCGCGGCAACCCACATCGCCCATGGCGTCATGGGGCTTCGGGTTGCCGACCTACTCCTCACAGC
CCTACACTTCCCGGGTCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSSWCTPRAAAATMAAIRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERPSNRPIPVLVSSLRAAEKIAE
LDDRARRLAERFWPGPLTIVVPAKPGLPSLLHAGTGRIGVRVPNHPIALKFIEAVGGAITGTSANLHRKPSPCTVQEAMK
QLGCRVDIYLDGGPTPGGTPSTVVDLTTPKPRLVRRGPIPPEEIEAVLATPIEA

Sequences:

>Translated_214_residues
MSSWCTPRAAAATMAAIRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERPSNRPIPVLVSSLRAAEKIAE
LDDRARRLAERFWPGPLTIVVPAKPGLPSLLHAGTGRIGVRVPNHPIALKFIEAVGGAITGTSANLHRKPSPCTVQEAMK
QLGCRVDIYLDGGPTPGGTPSTVVDLTTPKPRLVRRGPIPPEEIEAVLATPIEA
>Mature_213_residues
SSWCTPRAAAATMAAIRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERPSNRPIPVLVSSLRAAEKIAEL
DDRARRLAERFWPGPLTIVVPAKPGLPSLLHAGTGRIGVRVPNHPIALKFIEAVGGAITGTSANLHRKPSPCTVQEAMKQ
LGCRVDIYLDGGPTPGGTPSTVVDLTTPKPRLVRRGPIPPEEIEAVLATPIEA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=185, Percent_Identity=30.2702702702703, Blast_Score=67, Evalue=9e-12,
Organism=Escherichia coli, GI87081864, Length=199, Percent_Identity=31.1557788944724, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI2367210, Length=152, Percent_Identity=32.8947368421053, Blast_Score=80, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17537239, Length=194, Percent_Identity=30.4123711340206, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321269, Length=210, Percent_Identity=34.2857142857143, Blast_Score=98, Evalue=1e-21,
Organism=Drosophila melanogaster, GI78707274, Length=190, Percent_Identity=31.0526315789474, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22734; Mature: 22603

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSWCTPRAAAATMAAIRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERP
CCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEECCCCCHHHHHHHHHHHHHCCC
SNRPIPVLVSSLRAAEKIAELDDRARRLAERFWPGPLTIVVPAKPGLPSLLHAGTGRIGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCEEEE
RVPNHPIALKFIEAVGGAITGTSANLHRKPSPCTVQEAMKQLGCRVDIYLDGGPTPGGTP
EECCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCC
STVVDLTTPKPRLVRRGPIPPEEIEAVLATPIEA
CEEEEECCCCCHHEECCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSWCTPRAAAATMAAIRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERP
CCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEECCCCCHHHHHHHHHHHHHCCC
SNRPIPVLVSSLRAAEKIAELDDRARRLAERFWPGPLTIVVPAKPGLPSLLHAGTGRIGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCEEEE
RVPNHPIALKFIEAVGGAITGTSANLHRKPSPCTVQEAMKQLGCRVDIYLDGGPTPGGTP
EECCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCC
STVVDLTTPKPRLVRRGPIPPEEIEAVLATPIEA
CEEEEECCCCCHHEECCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]