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The map label for this gene is rsmB [H]

Identifier: 124027641

GI number: 124027641

Start: 753225

End: 754499

Strand: Reverse

Name: rsmB [H]

Synonym: Hbut_0762

Alternate gene names: 124027641

Gene position: 754499-753225 (Counterclockwise)

Preceding gene: 124027643

Following gene: 124027640

Centisome position: 45.26

GC content: 61.49

Gene sequence:

>1275_bases
ATGGTGCTGCCGGAGGAGGTTGCCGCTAGGATTCTCGCTGAGACCGTTAGGAGGAGGGCTTCGCTCCGCGACGTTGCGGT
TGGGTTCTTCTCCCGGAACCCCGAGCTGGACTACATGAAGCCCATTGTGAGGGTGTTGACGCTTGGCGTTGCAAGGCACT
ACCTGCTGCTGGACCGTGTCCTGGTGAGCCTAGGGTATGGGCCCCCGAGCCACTCTCAGCGCTGGATGCTAGCCAGGGTC
CTCGTGTACGAGGCGTTGTCGGGTAAGCTGAAGCCGACCCGGGCCCGGAAGCTGGCGGAGAAGGCGGGGCTCGACCCGGA
TAAGCTGCTGGAGCTGAGGGGGGCCGATCCCCGCGAGTTTGTGAAGGGCTTGTCGGGGCTTGACAGGTTGAGTGTGCTCT
ACAGCTTCCCCAGGTGGATGCTGGAGGAGCTGCTGGAAGCCAGGATACCAGACCTGCCAAAGCTGCTCGAGGTGCTGAAC
AGTGATCCAGTGCGCTGGATAAGGATTAGACCCGGCGTAGACCGTAAATGGCTTGCAGAGAGGCTGCAAGAGCAGGGCGT
CGTCATAGAACCCGACAAAGACCTCCCAGACGTAGCCAGGATAGTCAAGGGTGCCTCTGAGGCCACACGCACCAGGGAGT
ACCAGGAGGGCCTCTACACGATACAGGATAAGGCCTCCACACTGGTGGGCTGGGTCGCCTCGCCCAGGGGTAGGGTGGCA
GCTGACCCCACTGCTGGCGCGGCGATAAAGGCTAGCCACATGGCGTGGCTCGGCGCCCGCTACGTGGTTGCGGGGGATGT
GAAGCCGCAGCGCCTCCAGGAGGCCAAGAGGACGCTGTCAAGGCTGGGTCTAGGCCACATCGTGGATCTCGCCGTTGGCG
ATGCAAGGATGCCGTACTGGAGAAAGCTGGACGTAGTGATAGTGGATCCTCCATGCACTGATATTGGTAGGCTGCAGTAC
GAGCCCGAGGTCAAGCTCTGGCTCACCAGAGGCGACCTCCACTACTACCGCCGCCTGCAGCTCCGAATACTGGCATCAGT
AGCTAAGTCGCTGCCCCGGGGAGCCACGATAGTCTACAGCGTCTGCACCCTCACGAGGAGCGAGACGGTATGGGTTCTCC
GGAGGCTCCTCGAAACACACCCCGACGTGGAGATAGTGGAGCCCGAGCCCGTGCTCGGCGAGCGCCCACAAGGCCTACCA
AAGGCTCAGCGCATGCTACCACACCTACACAAGACACAAGGCTTCTTCATAGCAAAACTAGCCAAGATAGCATGA

Upstream 100 bases:

>100_bases
CCTCAGCATGGCTAGGCGGAGGGCTATATAGGCATGATCGGTGGGTGGGAGAAGCCTAGAAGACCGCAGTGTGGTGTTTG
ACGGAGCTGGGTTAGAGGGT

Downstream 100 bases:

>100_bases
GCCCGGAACAACCAGAGTTAAGCTAGATAAGCCCCTACAGTAGCACTCTCCCTAGAGCTGCAGAGGAGATCTTCAAGCCG
ATAAGAAGCATAGCAGACTC

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MVLPEEVAARILAETVRRRASLRDVAVGFFSRNPELDYMKPIVRVLTLGVARHYLLLDRVLVSLGYGPPSHSQRWMLARV
LVYEALSGKLKPTRARKLAEKAGLDPDKLLELRGADPREFVKGLSGLDRLSVLYSFPRWMLEELLEARIPDLPKLLEVLN
SDPVRWIRIRPGVDRKWLAERLQEQGVVIEPDKDLPDVARIVKGASEATRTREYQEGLYTIQDKASTLVGWVASPRGRVA
ADPTAGAAIKASHMAWLGARYVVAGDVKPQRLQEAKRTLSRLGLGHIVDLAVGDARMPYWRKLDVVIVDPPCTDIGRLQY
EPEVKLWLTRGDLHYYRRLQLRILASVAKSLPRGATIVYSVCTLTRSETVWVLRRLLETHPDVEIVEPEPVLGERPQGLP
KAQRMLPHLHKTQGFFIAKLAKIA

Sequences:

>Translated_424_residues
MVLPEEVAARILAETVRRRASLRDVAVGFFSRNPELDYMKPIVRVLTLGVARHYLLLDRVLVSLGYGPPSHSQRWMLARV
LVYEALSGKLKPTRARKLAEKAGLDPDKLLELRGADPREFVKGLSGLDRLSVLYSFPRWMLEELLEARIPDLPKLLEVLN
SDPVRWIRIRPGVDRKWLAERLQEQGVVIEPDKDLPDVARIVKGASEATRTREYQEGLYTIQDKASTLVGWVASPRGRVA
ADPTAGAAIKASHMAWLGARYVVAGDVKPQRLQEAKRTLSRLGLGHIVDLAVGDARMPYWRKLDVVIVDPPCTDIGRLQY
EPEVKLWLTRGDLHYYRRLQLRILASVAKSLPRGATIVYSVCTLTRSETVWVLRRLLETHPDVEIVEPEPVLGERPQGLP
KAQRMLPHLHKTQGFFIAKLAKIA
>Mature_424_residues
MVLPEEVAARILAETVRRRASLRDVAVGFFSRNPELDYMKPIVRVLTLGVARHYLLLDRVLVSLGYGPPSHSQRWMLARV
LVYEALSGKLKPTRARKLAEKAGLDPDKLLELRGADPREFVKGLSGLDRLSVLYSFPRWMLEELLEARIPDLPKLLEVLN
SDPVRWIRIRPGVDRKWLAERLQEQGVVIEPDKDLPDVARIVKGASEATRTREYQEGLYTIQDKASTLVGWVASPRGRVA
ADPTAGAAIKASHMAWLGARYVVAGDVKPQRLQEAKRTLSRLGLGHIVDLAVGDARMPYWRKLDVVIVDPPCTDIGRLQY
EPEVKLWLTRGDLHYYRRLQLRILASVAKSLPRGATIVYSVCTLTRSETVWVLRRLLETHPDVEIVEPEPVLGERPQGLP
KAQRMLPHLHKTQGFFIAKLAKIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=318, Percent_Identity=26.4150943396226, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI76150623, Length=318, Percent_Identity=26.4150943396226, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI2367212, Length=437, Percent_Identity=28.3752860411899, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081985, Length=230, Percent_Identity=28.695652173913, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536757, Length=320, Percent_Identity=26.5625, Blast_Score=82, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6324268, Length=362, Percent_Identity=25.1381215469613, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI22024126, Length=321, Percent_Identity=27.7258566978193, Blast_Score=75, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 47877; Mature: 47877

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLPEEVAARILAETVRRRASLRDVAVGFFSRNPELDYMKPIVRVLTLGVARHYLLLDRV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVSLGYGPPSHSQRWMLARVLVYEALSGKLKPTRARKLAEKAGLDPDKLLELRGADPREF
HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHH
VKGLSGLDRLSVLYSFPRWMLEELLEARIPDLPKLLEVLNSDPVRWIRIRPGVDRKWLAE
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHH
RLQEQGVVIEPDKDLPDVARIVKGASEATRTREYQEGLYTIQDKASTLVGWVASPRGRVA
HHHHCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCCEEHHHHHHHHHHHHCCCCCCCC
ADPTAGAAIKASHMAWLGARYVVAGDVKPQRLQEAKRTLSRLGLGHIVDLAVGDARMPYW
CCCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
RKLDVVIVDPPCTDIGRLQYEPEVKLWLTRGDLHYYRRLQLRILASVAKSLPRGATIVYS
EEEEEEEECCCCCCCCCEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VCTLTRSETVWVLRRLLETHPDVEIVEPEPVLGERPQGLPKAQRMLPHLHKTQGFFIAKL
HHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH
AKIA
HHCC
>Mature Secondary Structure
MVLPEEVAARILAETVRRRASLRDVAVGFFSRNPELDYMKPIVRVLTLGVARHYLLLDRV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVSLGYGPPSHSQRWMLARVLVYEALSGKLKPTRARKLAEKAGLDPDKLLELRGADPREF
HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHH
VKGLSGLDRLSVLYSFPRWMLEELLEARIPDLPKLLEVLNSDPVRWIRIRPGVDRKWLAE
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHH
RLQEQGVVIEPDKDLPDVARIVKGASEATRTREYQEGLYTIQDKASTLVGWVASPRGRVA
HHHHCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCCEEHHHHHHHHHHHHCCCCCCCC
ADPTAGAAIKASHMAWLGARYVVAGDVKPQRLQEAKRTLSRLGLGHIVDLAVGDARMPYW
CCCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
RKLDVVIVDPPCTDIGRLQYEPEVKLWLTRGDLHYYRRLQLRILASVAKSLPRGATIVYS
EEEEEEEECCCCCCCCCEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VCTLTRSETVWVLRRLLETHPDVEIVEPEPVLGERPQGLPKAQRMLPHLHKTQGFFIAKL
HHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH
AKIA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]