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The map label for this gene is yecS [H]

Identifier: 124027567

GI number: 124027567

Start: 668562

End: 669248

Strand: Direct

Name: yecS [H]

Synonym: Hbut_0686

Alternate gene names: 124027567

Gene position: 668562-669248 (Clockwise)

Preceding gene: 124027566

Following gene: 124027568

Centisome position: 40.1

GC content: 56.91

Gene sequence:

>687_bases
TTGCCCTCGCTCTCCAGCATTTTTGAAAACCTAGAACCCTACATTGGTGTAATCCTTTCGGGGCTGCCCAACACGCTCAT
ACTAACCTTTGGCGGGTTCGGCATAGGCCTAATTGTCGGCCCCCTGCTAGCCTTCCTAGAGGTCTATGGCCCCAGGCCCC
TCGCGAGGCTCGCGGCGGCGGTTGAGGAGGTTATCCGCGGCATACCCCTTCTAGTTATAATGTTCCTAGTCTACTTTGGG
CTTCCAGAGCTAGGCGTGAGACTGGACCCCCTCACGGCCGCAGTTGTATCGATAGGCATCAGGAGTCTCGCCTACCAGTC
GCAGATCATTAGGAGCGCTATACTATCGATACCCGCTGGGCAGTGGGAGGCAGCCCTAGCCCTAGGCATGAGCCCTCTCG
AGGCATTCGTGAACGTCATTGCGCCCCAGGCGTTCCGCATAGCGATACCCGGCCTCGTAAACCAGTTCACCGTAGACCTC
AAGGACACATCGATAGCCTACGCTATAGGCGTCGCGGAGATATTCACACAGTCCGTCCACGTGGCACAGATTATCCTTGA
CTACCTCTCACCACTCCTCTTCGTGGGCCTCATCTACTTCATACTCACCTATACGGCAAGCAGTCTTGCCTCAATCCTGT
ACCGCAGAGTGGCGATACCAGGCCTGGGCGGAGGTGCACAGCCGTGA

Upstream 100 bases:

>100_bases
CGAGCTGGTGCAGAAGTATTTCGGCAGCGAGCAGCTACCATATACTTAATACTCAGCGTAGCGAGTAGCCAGGCACACGG
CCCGGGGAGCGTGTACGGGC

Downstream 100 bases:

>100_bases
ATAGCGACATAGTGCTCCGCGTTGAGAACCTCTGGAAGAGCTTTGGCAGCCAGACGGTGCTCCGGGGCGTCAGCTTTACG
GTCCGCCGCGGAGAGGTAAA

Product: glutamate/aspartate transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MPSLSSIFENLEPYIGVILSGLPNTLILTFGGFGIGLIVGPLLAFLEVYGPRPLARLAAAVEEVIRGIPLLVIMFLVYFG
LPELGVRLDPLTAAVVSIGIRSLAYQSQIIRSAILSIPAGQWEAALALGMSPLEAFVNVIAPQAFRIAIPGLVNQFTVDL
KDTSIAYAIGVAEIFTQSVHVAQIILDYLSPLLFVGLIYFILTYTASSLASILYRRVAIPGLGGGAQP

Sequences:

>Translated_228_residues
MPSLSSIFENLEPYIGVILSGLPNTLILTFGGFGIGLIVGPLLAFLEVYGPRPLARLAAAVEEVIRGIPLLVIMFLVYFG
LPELGVRLDPLTAAVVSIGIRSLAYQSQIIRSAILSIPAGQWEAALALGMSPLEAFVNVIAPQAFRIAIPGLVNQFTVDL
KDTSIAYAIGVAEIFTQSVHVAQIILDYLSPLLFVGLIYFILTYTASSLASILYRRVAIPGLGGGAQP
>Mature_227_residues
PSLSSIFENLEPYIGVILSGLPNTLILTFGGFGIGLIVGPLLAFLEVYGPRPLARLAAAVEEVIRGIPLLVIMFLVYFGL
PELGVRLDPLTAAVVSIGIRSLAYQSQIIRSAILSIPAGQWEAALALGMSPLEAFVNVIAPQAFRIAIPGLVNQFTVDLK
DTSIAYAIGVAEIFTQSVHVAQIILDYLSPLLFVGLIYFILTYTASSLASILYRRVAIPGLGGGAQP

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=194, Percent_Identity=37.6288659793814, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787030, Length=214, Percent_Identity=37.8504672897196, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=34.2465753424658, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787087, Length=193, Percent_Identity=29.0155440414508, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786874, Length=229, Percent_Identity=28.3842794759825, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=32.843137254902, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=26.8181818181818, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787086, Length=171, Percent_Identity=29.8245614035088, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI48994930, Length=137, Percent_Identity=32.1167883211679, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24238; Mature: 24107

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLSSIFENLEPYIGVILSGLPNTLILTFGGFGIGLIVGPLLAFLEVYGPRPLARLAAA
CCCHHHHHHHHHHHHHHHHHCCCCCEEEHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VEEVIRGIPLLVIMFLVYFGLPELGVRLDPLTAAVVSIGIRSLAYQSQIIRSAILSIPAG
HHHHHCCCHHHHHHHHHHHCCHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QWEAALALGMSPLEAFVNVIAPQAFRIAIPGLVNQFTVDLKDTSIAYAIGVAEIFTQSVH
CHHHHHHHCCHHHHHHHHHHCCHHHEEECCHHHHHHEEECCCCHHHHHHHHHHHHHHHHH
VAQIILDYLSPLLFVGLIYFILTYTASSLASILYRRVAIPGLGGGAQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PSLSSIFENLEPYIGVILSGLPNTLILTFGGFGIGLIVGPLLAFLEVYGPRPLARLAAA
CCHHHHHHHHHHHHHHHHHCCCCCEEEHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VEEVIRGIPLLVIMFLVYFGLPELGVRLDPLTAAVVSIGIRSLAYQSQIIRSAILSIPAG
HHHHHCCCHHHHHHHHHHHCCHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QWEAALALGMSPLEAFVNVIAPQAFRIAIPGLVNQFTVDLKDTSIAYAIGVAEIFTQSVH
CHHHHHHHCCHHHHHHHHHHCCHHHEEECCHHHHHHEEECCCCHHHHHHHHHHHHHHHHH
VAQIILDYLSPLLFVGLIYFILTYTASSLASILYRRVAIPGLGGGAQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]