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The map label for this gene is yjfH [C]

Identifier: 124025638

GI number: 124025638

Start: 858043

End: 859371

Strand: Direct

Name: yjfH [C]

Synonym: NATL1_09311

Alternate gene names: 124025638

Gene position: 858043-859371 (Clockwise)

Preceding gene: 124025637

Following gene: 124025639

Centisome position: 46.01

GC content: 38.15

Gene sequence:

>1329_bases
ATGAGTTATCGCTTCAATAAAGACACAAGGAATTCAAAAAACTCTTCATCTAATAAACGAAGTAGTAATTATTCTCGTCA
AGATAATGACTCCAAAAAGTCAAACTTTAATGATAGAAGAAGAACCAATAACAAAATAAATCGTCATTCTTCTGATCAAG
TAAATCAATATTCATTAGGTAAAGAATTTTCTGATCGATCAAGAAGTAGTAACGAGGCTAATTCCAACTACAGAGGATCT
AATCGATTCGAGAGGAAATCGACCAACTCTTCGTATAGAAATCAAGACTCTCAGGAAACAAACAATTACAGAGGATCTAA
TCGATTCGAGAGGAAATCGACCAACTCTTCGTATAGAAATCAAGACTCTCAGGAAACAAACAATTACAGAGGATCTAATC
GATTCGAGAGGAAATCGACCAACCCTGCGTACAGAAATAAAAATTCTCAGAGAGCTAGCAGTTATAAAAGAGAAGAAAAT
AATGAACCTCTTTCATATTCTGAAAGCTTTAGCAAAACATTAAGTGATGATCTGATTTGGGGCCGCCATTCAACTGAGGC
AGCCCTTGTTGGCGGCAGGGCAATTCACAGGATTTGGTGTACCTCCGAATTACGCAGTACACCAAAGTTTTTTCAACTTC
TCAAAGATCAAAAAGCTTCTGGGGTCTTAGTTGAAGAAGTTTCATGGTCAAGGCTTGGCCAGCTCACAAATGGTGCAGTC
CATCAAGGAATAGTTTTACAAATTGCCGCATCAAAAACACTTGACTTGAAGAATTTAATAGATGCTTGCAAAGCTTTTGG
TGATTCATCATTGCTCTTAGCTTTAGATGGCTTAACTGATCCTCAGAATCTTGGGGCAATTATTCGATCTGCCGAAGCCC
TCGGTGCTCAAGGATTAATCCTTCCACAAAGACGTAGTGCAGGATTAACAGGATCCGTAGCAAAAGTTGCCGCTGGAGCT
CTGGAACATTTGCCTGTAGCAAGAGTTGTTAATTTAAATAGGTCTTTGGAGAAATTGAAAGATGAAGGTTATACCGTTGT
TGGCCTGGCGGAGGAGGGATCATCTACTTTATCTGAAATCAAATTTCAAGGTCCTTTAGTAGTAGTAGTTGGGTCTGAAG
ATAAAGGAATTTCTCTAATAACTAGAAGATTATGTGATCAGTTAGTAAGAATTCCTCTTAAGGGAGTCACTACAAGCCTA
AATGCATCAGTTGCTACGTCTATTTTCTTATATGAAGTTGCTAGATCCAAATGGATGCGCTCAATCTCTGGACAAGACCC
TTCTCCTAGATTATTGAAACCTCAGATTTCATCTGAAAAGATTAACTAA

Upstream 100 bases:

>100_bases
AGACTATTGTTGGTTGGTTGTTTTTGAAAAATCCAAATCGGCTTGCTGATTTATTCGATCTTCTTGATCGACCCATTAAC
TAGAAAATATTTCTTATAAA

Downstream 100 bases:

>100_bases
TCTCTTTAATTTAACCTTTAAAAGATGCGTATATTTTTTATAGTTTTTTTAGAATTTTAAAAACTTCATAATTAAATTAT
ACTATTAATTACTTCAGGCA

Product: RNA methyltransferase TrmH, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSYRFNKDTRNSKNSSSNKRSSNYSRQDNDSKKSNFNDRRRTNNKINRHSSDQVNQYSLGKEFSDRSRSSNEANSNYRGS
NRFERKSTNSSYRNQDSQETNNYRGSNRFERKSTNSSYRNQDSQETNNYRGSNRFERKSTNPAYRNKNSQRASSYKREEN
NEPLSYSESFSKTLSDDLIWGRHSTEAALVGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLTNGAV
HQGIVLQIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGA
LEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSL
NASVATSIFLYEVARSKWMRSISGQDPSPRLLKPQISSEKIN

Sequences:

>Translated_442_residues
MSYRFNKDTRNSKNSSSNKRSSNYSRQDNDSKKSNFNDRRRTNNKINRHSSDQVNQYSLGKEFSDRSRSSNEANSNYRGS
NRFERKSTNSSYRNQDSQETNNYRGSNRFERKSTNSSYRNQDSQETNNYRGSNRFERKSTNPAYRNKNSQRASSYKREEN
NEPLSYSESFSKTLSDDLIWGRHSTEAALVGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLTNGAV
HQGIVLQIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGA
LEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSL
NASVATSIFLYEVARSKWMRSISGQDPSPRLLKPQISSEKIN
>Mature_441_residues
SYRFNKDTRNSKNSSSNKRSSNYSRQDNDSKKSNFNDRRRTNNKINRHSSDQVNQYSLGKEFSDRSRSSNEANSNYRGSN
RFERKSTNSSYRNQDSQETNNYRGSNRFERKSTNSSYRNQDSQETNNYRGSNRFERKSTNPAYRNKNSQRASSYKREENN
EPLSYSESFSKTLSDDLIWGRHSTEAALVGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLTNGAVH
QGIVLQIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGAL
EHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLN
ASVATSIFLYEVARSKWMRSISGQDPSPRLLKPQISSEKIN

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=218, Percent_Identity=28.8990825688073, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1790623, Length=246, Percent_Identity=39.0243902439024, Blast_Score=161, Evalue=7e-41,
Organism=Escherichia coli, GI1788935, Length=224, Percent_Identity=27.2321428571429, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790083, Length=150, Percent_Identity=28.6666666666667, Blast_Score=65, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17555908, Length=259, Percent_Identity=29.7297297297297, Blast_Score=88, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6324775, Length=404, Percent_Identity=26.4851485148515, Blast_Score=91, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 49341; Mature: 49210

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYRFNKDTRNSKNSSSNKRSSNYSRQDNDSKKSNFNDRRRTNNKINRHSSDQVNQYSLG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHCCHHCCCCCCCCHHHHHC
KEFSDRSRSSNEANSNYRGSNRFERKSTNSSYRNQDSQETNNYRGSNRFERKSTNSSYRN
CHHHHHCCCCCCCCCCCCCCCCHHHCCCCCHHCCCCCHHHCCCCCCCCHHHCCCCCHHCC
QDSQETNNYRGSNRFERKSTNPAYRNKNSQRASSYKREENNEPLSYSESFSKTLSDDLIW
CCCHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
GRHSTEAALVGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLTNGAV
CCCCCCHHHHCCHHHHHHHCCHHHHCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCHH
HQGIVLQIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLI
HCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCE
LPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEI
ECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
KFQGPLVVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVARSKWMR
EECCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
SISGQDPSPRLLKPQISSEKIN
HHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SYRFNKDTRNSKNSSSNKRSSNYSRQDNDSKKSNFNDRRRTNNKINRHSSDQVNQYSLG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHCCHHCCCCCCCCHHHHHC
KEFSDRSRSSNEANSNYRGSNRFERKSTNSSYRNQDSQETNNYRGSNRFERKSTNSSYRN
CHHHHHCCCCCCCCCCCCCCCCHHHCCCCCHHCCCCCHHHCCCCCCCCHHHCCCCCHHCC
QDSQETNNYRGSNRFERKSTNPAYRNKNSQRASSYKREENNEPLSYSESFSKTLSDDLIW
CCCHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
GRHSTEAALVGGRAIHRIWCTSELRSTPKFFQLLKDQKASGVLVEEVSWSRLGQLTNGAV
CCCCCCHHHHCCHHHHHHHCCHHHHCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCHH
HQGIVLQIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLI
HCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCE
LPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEI
ECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
KFQGPLVVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVARSKWMR
EECCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
SISGQDPSPRLLKPQISSEKIN
HHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]