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The map label for this gene is rpe [H]

Identifier: 124025511

GI number: 124025511

Start: 740353

End: 741105

Strand: Reverse

Name: rpe [H]

Synonym: NATL1_08041

Alternate gene names: 124025511

Gene position: 741105-740353 (Counterclockwise)

Preceding gene: 124025519

Following gene: 124025503

Centisome position: 39.74

GC content: 42.36

Gene sequence:

>753_bases
ATGATCCAATCCATTTCTTCAGCAATTTTTACTGAGCACCGTCCAGTTCAGATAATCCCTTCAGTATTGCCAGCAGACTG
GGCAAACATGGGTCAGTGCGTAAAAGATCTTGAACTGGCGGGTGTAGACAGAATTCAATTTGATGTGATGGATGGGAACT
TTGTCCCGAATCTAACTTTTGGTCCAGAAATGATTTCCGCATGCCGAAAGTATTGCAGCGTTCCATTTGAGACTCAGTTA
ATGGTTAGTCAATACAACTGTGAAACCATGCTTGAGGGATATGTCGAAGCAAGTAAGGGGGCTAACGGAGAGCCAGGTGT
TGTAATTGCTCATGCTGAAGCAAATGTTCACCTTCATCGAATTCTTGGCAAGATTCGTCAACTTGGAGGATCTCCCTCAG
TGGCCCTTAATCCTCATACTCCAATGGATATGGTTAAGGATGTGCTTGATATGGTTGATCACGTATTGGTAATGACTGTT
AACCCCGGATTTGGTGGCCAAGCCTACATCCCAACAATGCTCAACAAAATTACGCAATTAAGAAAAACTATTTTAGACAA
TGGATATAACGTAGATATAGAAGTGGACGGAGGAATAAAGGCTGATTGGTCACTATCGCAATGCTGCGCTGCAGGAGCAA
ACTGCTTCATTGCAGGAAGTGGTATGTTTGCTTATCCAACACTTAAAGAAGGTTGTGATGCACTAAGAAAAGTTGCCAAC
GACGCACAGAATGGAATAATTGTTGAAAAATAA

Upstream 100 bases:

>100_bases
TTATTATCTGTTGATAAGCAATAATTACTGTATCAGTGCATGGTCACACTAGAACTTGTGACCATGAATTAATAGACTCT
CTGCCACAAGACAAAAAACA

Downstream 100 bases:

>100_bases
TTAACTTAATTGTTAATTACTATGTATCGAAGAACCAACCATAACTATGTAAACCTACCCCAAGAAGGTTCACTCCAATA
TAGCAAACAATAATAACGAA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MIQSISSAIFTEHRPVQIIPSVLPADWANMGQCVKDLELAGVDRIQFDVMDGNFVPNLTFGPEMISACRKYCSVPFETQL
MVSQYNCETMLEGYVEASKGANGEPGVVIAHAEANVHLHRILGKIRQLGGSPSVALNPHTPMDMVKDVLDMVDHVLVMTV
NPGFGGQAYIPTMLNKITQLRKTILDNGYNVDIEVDGGIKADWSLSQCCAAGANCFIAGSGMFAYPTLKEGCDALRKVAN
DAQNGIIVEK

Sequences:

>Translated_250_residues
MIQSISSAIFTEHRPVQIIPSVLPADWANMGQCVKDLELAGVDRIQFDVMDGNFVPNLTFGPEMISACRKYCSVPFETQL
MVSQYNCETMLEGYVEASKGANGEPGVVIAHAEANVHLHRILGKIRQLGGSPSVALNPHTPMDMVKDVLDMVDHVLVMTV
NPGFGGQAYIPTMLNKITQLRKTILDNGYNVDIEVDGGIKADWSLSQCCAAGANCFIAGSGMFAYPTLKEGCDALRKVAN
DAQNGIIVEK
>Mature_250_residues
MIQSISSAIFTEHRPVQIIPSVLPADWANMGQCVKDLELAGVDRIQFDVMDGNFVPNLTFGPEMISACRKYCSVPFETQL
MVSQYNCETMLEGYVEASKGANGEPGVVIAHAEANVHLHRILGKIRQLGGSPSVALNPHTPMDMVKDVLDMVDHVLVMTV
NPGFGGQAYIPTMLNKITQLRKTILDNGYNVDIEVDGGIKADWSLSQCCAAGANCFIAGSGMFAYPTLKEGCDALRKVAN
DAQNGIIVEK

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=231, Percent_Identity=34.6320346320346, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI219879828, Length=229, Percent_Identity=32.7510917030568, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI24307923, Length=141, Percent_Identity=32.6241134751773, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1789788, Length=220, Percent_Identity=37.7272727272727, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1790523, Length=210, Percent_Identity=32.8571428571429, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790754, Length=180, Percent_Identity=26.1111111111111, Blast_Score=72, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17552948, Length=214, Percent_Identity=35.0467289719626, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322341, Length=220, Percent_Identity=32.2727272727273, Blast_Score=104, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24586301, Length=229, Percent_Identity=36.2445414847162, Blast_Score=121, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 27063; Mature: 27063

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQSISSAIFTEHRPVQIIPSVLPADWANMGQCVKDLELAGVDRIQFDVMDGNFVPNLTF
CCCHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
GPEMISACRKYCSVPFETQLMVSQYNCETMLEGYVEASKGANGEPGVVIAHAEANVHLHR
CHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
ILGKIRQLGGSPSVALNPHTPMDMVKDVLDMVDHVLVMTVNPGFGGQAYIPTMLNKITQL
HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHH
RKTILDNGYNVDIEVDGGIKADWSLSQCCAAGANCFIAGSGMFAYPTLKEGCDALRKVAN
HHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCCEEEECCCEEECCCHHHHHHHHHHHHH
DAQNGIIVEK
HHHCCEEEEC
>Mature Secondary Structure
MIQSISSAIFTEHRPVQIIPSVLPADWANMGQCVKDLELAGVDRIQFDVMDGNFVPNLTF
CCCHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
GPEMISACRKYCSVPFETQLMVSQYNCETMLEGYVEASKGANGEPGVVIAHAEANVHLHR
CHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
ILGKIRQLGGSPSVALNPHTPMDMVKDVLDMVDHVLVMTVNPGFGGQAYIPTMLNKITQL
HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHH
RKTILDNGYNVDIEVDGGIKADWSLSQCCAAGANCFIAGSGMFAYPTLKEGCDALRKVAN
HHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCCEEEECCCEEECCCHHHHHHHHHHHHH
DAQNGIIVEK
HHHCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]