| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is yhiU [C]
Identifier: 124025491
GI number: 124025491
Start: 716534
End: 717451
Strand: Direct
Name: yhiU [C]
Synonym: NATL1_07841
Alternate gene names: 124025491
Gene position: 716534-717451 (Clockwise)
Preceding gene: 124025490
Following gene: 124025492
Centisome position: 38.43
GC content: 35.95
Gene sequence:
>918_bases ATGTTAGTGATGTTTAAATACTTATCTTTAAAAATTTTATTTCCTCTTGGCATAACACCTTTATGCATGCTCTTACTTAG TGGATGTGATAATAAAAATTTAGAAGTAAATCAAAGTCTAAAGGAGATTCAAGTTGTTGATAGGATTGAGGGTGTAGCTG CTTTGGGCCAGTTAAATCCTCTTGGAGAAGTAAGAAAATTAGCAGCTCCAAATAGTGGAAAGGGTGGTACACCAAGATTA TCTAAATTATTAATTCGAGAAGGTGACTATATTATCAAGGATCAAATATTAGCAGTTTTTGATAATCGTCCTAAGCTTGA AGCTAATTTGAAATCTGCGCAAGCTAATTTAAATATATTAATGAGTGAAATCAGGATAAAAAAAAGGGAAATTAATAGAT ATCAAACTCTTCTTGAGAAAGGAGCAGTGGCGGAAATCGTTTTAGACAAGATGAAAGATGATTTGTTTATTTCTGAGACC AAGATTTTAAAGCTTAAAGCTGCCATCGATGCAATTAACGTTGATTTAGAACAAACACAATTAAAAAGTCCAATTGATGG AATCGTTCTGCAAGTCTTAGTTCGTGAGGGAGAGAGACCAAATTCGTCTGGTGTGATTAATGTTGGCGCTAACCAATTAA TGGAAGCGCTTATTGAAGTGTATGAATCCGATATAGATAGAGTTCAAATGGGTCAAGCTGTTGATTTAATTAGTGAAAAT GGAGGCTTTAACGGCTCATTAAGTGGTCAAGTGACTTTGATTAGCCCACAAGTCAGGCAAAGAAGAGTGCTCTCAACTGA TCCAACTGGCGATGCTGACTCAAGGGTTGTTGAGGTTCGAGTCAAGCTTGATAATTCATCAGCCAAAAAGGTCTCTCATC TAACTGGAATGAAAGTCATTGCTCGTTTTCAGCCGTAG
Upstream 100 bases:
>100_bases ATTGCCTAAATCAAAAACGTAATGATAAAACAAGAGGGATTTTAACTAAATTCTTTGGTTCTTCTTGGGCCGATGAATAC ATAAATAAAATCCTTTTTGA
Downstream 100 bases:
>100_bases TGGAATTAAAAAATATTTTTAAAAAAAGGAAAATACCTCTTGCTTGGCTTTTGCTGACAAGACAACCTTTAAGAATATTG GTAGCCATTGCAGGGATAGC
Product: ABC transporter
Products: NA
Alternate protein names: DevB Family ABC Exporter Membrane Fusion Protein; ABC Transporter; DevB-Like Secretion Protein; Secretion Protein HlyD; Secretion Protein HlyD Family Protein; ABC-Transporter Membrane Fusion Protein; Auxiliary Transport Protein MFP Family; Transporter MFP Family; Membrane Fusion Protein Family Protein; Secretion Protein Hlyd Family Protein; Glycolipid ABC Transporter Membrane Protein; Secretion Protein HlyD Family Protein DevB; Multidrug Resistance Efflux Pump-Like; Membrane Fusion Protein; ABC-Transporter DevB-Like Protein; DevB-Like ABC Transporter Membrane Fusion Protein; ABC-Transporter DevB-Like-Protein; ABC-Transporter Component; ABC Transporter Component; ABC Transporter Component-Like; Membrane Fusion Protein DevB; RTX Secretion Protein D; Permease Protein DevB-Like Protein
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MLVMFKYLSLKILFPLGITPLCMLLLSGCDNKNLEVNQSLKEIQVVDRIEGVAALGQLNPLGEVRKLAAPNSGKGGTPRL SKLLIREGDYIIKDQILAVFDNRPKLEANLKSAQANLNILMSEIRIKKREINRYQTLLEKGAVAEIVLDKMKDDLFISET KILKLKAAIDAINVDLEQTQLKSPIDGIVLQVLVREGERPNSSGVINVGANQLMEALIEVYESDIDRVQMGQAVDLISEN GGFNGSLSGQVTLISPQVRQRRVLSTDPTGDADSRVVEVRVKLDNSSAKKVSHLTGMKVIARFQP
Sequences:
>Translated_305_residues MLVMFKYLSLKILFPLGITPLCMLLLSGCDNKNLEVNQSLKEIQVVDRIEGVAALGQLNPLGEVRKLAAPNSGKGGTPRL SKLLIREGDYIIKDQILAVFDNRPKLEANLKSAQANLNILMSEIRIKKREINRYQTLLEKGAVAEIVLDKMKDDLFISET KILKLKAAIDAINVDLEQTQLKSPIDGIVLQVLVREGERPNSSGVINVGANQLMEALIEVYESDIDRVQMGQAVDLISEN GGFNGSLSGQVTLISPQVRQRRVLSTDPTGDADSRVVEVRVKLDNSSAKKVSHLTGMKVIARFQP >Mature_305_residues MLVMFKYLSLKILFPLGITPLCMLLLSGCDNKNLEVNQSLKEIQVVDRIEGVAALGQLNPLGEVRKLAAPNSGKGGTPRL SKLLIREGDYIIKDQILAVFDNRPKLEANLKSAQANLNILMSEIRIKKREINRYQTLLEKGAVAEIVLDKMKDDLFISET KILKLKAAIDAINVDLEQTQLKSPIDGIVLQVLVREGERPNSSGVINVGANQLMEALIEVYESDIDRVQMGQAVDLISEN GGFNGSLSGQVTLISPQVRQRRVLSTDPTGDADSRVVEVRVKLDNSSAKKVSHLTGMKVIARFQP
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Attached To The Inner Membrane By A Lipid Anchor [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33566; Mature: 33566
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVMFKYLSLKILFPLGITPLCMLLLSGCDNKNLEVNQSLKEIQVVDRIEGVAALGQLNP CEEEEEEHHHHEEHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC LGEVRKLAAPNSGKGGTPRLSKLLIREGDYIIKDQILAVFDNRPKLEANLKSAQANLNIL HHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEHHHHHEEECCCCCCHHHHHHHHHHHHHH MSEIRIKKREINRYQTLLEKGAVAEIVLDKMKDDLFISETKILKLKAAIDAINVDLEQTQ HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCHHEEEHHHHHHHHCCCHHHHH LKSPIDGIVLQVLVREGERPNSSGVINVGANQLMEALIEVYESDIDRVQMGQAVDLISEN HCCCHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC GGFNGSLSGQVTLISPQVRQRRVLSTDPTGDADSRVVEVRVKLDNSSAKKVSHLTGMKVI CCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH ARFQP EECCC >Mature Secondary Structure MLVMFKYLSLKILFPLGITPLCMLLLSGCDNKNLEVNQSLKEIQVVDRIEGVAALGQLNP CEEEEEEHHHHEEHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC LGEVRKLAAPNSGKGGTPRLSKLLIREGDYIIKDQILAVFDNRPKLEANLKSAQANLNIL HHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEHHHHHEEECCCCCCHHHHHHHHHHHHHH MSEIRIKKREINRYQTLLEKGAVAEIVLDKMKDDLFISETKILKLKAAIDAINVDLEQTQ HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCHHEEEHHHHHHHHCCCHHHHH LKSPIDGIVLQVLVREGERPNSSGVINVGANQLMEALIEVYESDIDRVQMGQAVDLISEN HCCCHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC GGFNGSLSGQVTLISPQVRQRRVLSTDPTGDADSRVVEVRVKLDNSSAKKVSHLTGMKVI CCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH ARFQP EECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA