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The map label for this gene is ydiS [C]

Identifier: 124025419

GI number: 124025419

Start: 654667

End: 656310

Strand: Reverse

Name: ydiS [C]

Synonym: NATL1_07121

Alternate gene names: 124025419

Gene position: 656310-654667 (Counterclockwise)

Preceding gene: 124025422

Following gene: 124025416

Centisome position: 35.2

GC content: 35.83

Gene sequence:

>1644_bases
ATGATTGACAAGCCCTATGAAGTCATAATTATCGGTTCAGGTGCAACCGGGGGAATGGCAGCCTTAACAATGGCTAAGGC
TGGAGTAAGAGTACTAGTAATAGAAAGAGGTCCTGAACTAGAGATCAAGCAGGCAAACGGAACAGAGCCTTGCAATATGA
TTCGGAGACTTTTAGGGGTAACAACTGGAAATTATCAAAATCAACCTCAACATCCAGGGTTCTGGAAATCAAATCCCTTA
CTGTACGCAAACAAAAAAGCAAATCCTTATACACACCCGCCAAAAGCCCCCTTCATGTGGACGCAAGGCAATCAAGTTGG
TGGAAGGAGCCTTACTTGGGGAGGGATAACCTTAAGATTATCTGAGGAAGATTTTGAAGCCTCAAAAGAAAAAGAATACA
ATCTCGAATGGCCTATTAGTTACAAAGACCTTGAGTCACATTATTCGGAAATAGAGAGTTTTCTAAAAATATACGGCAAC
AAAGACGATCTCAATCAACTACCTAATGGTGAATATATTGGCAAACTTCCATTTACAGAAAGTGAATCAAGATTTGCCTC
CAATATAAAAGAAAATTTAAATCTTCCCTTTATACATTCCAGAGGGTTTGGACCAAATGAAGATAAAACGAAATGGCCAA
GATATAGCAGTTTAGGCAGCACATTAAAAGAAGCCGCTAGGCTAGGTAAAATAGAAATACTTTCAAATCATATTGTAGAT
AAATTAGTTTTGAATAAGGATAGGAAGTCTGCAAAAAGTATTATTGTAGTAAACCAAAAAAATGGAGAAAGAAGTGAATT
AGAAAGTAAATTAATAATACTATGTTCATCAACAATCCAAACAATTAGAATTCTATTAAGTTCCGAAGAAAGTAATAATT
CAAATGGTCTAATTGACCCCTCTAATTCATTAGGAATGAACTTAATGGATCATATATCAACCTGTAGGTTTTTCACTGTC
CCTATCGATAAGAATTTCAATGATTATTCAGATAAAAATAATAATCATCTTTTAACAGGAGCAGGTAGCTTCTTTATTCC
CATCGGTAGAGAGAGCTCAACTAAAAAAAACTTTGTTGGTGGATATGGCATCTGGGGAGGAATAGATAGATTTGAACCAC
CAGAAGTTTTTAAGAAATATAAAAACACAAAAACTGGTTTCCTTATTGGTCATGGAGAAGTACTCCCAAATAAAAAAAAC
ACTGTTTCTCTCTCAAATACCAATGATCTATATGGTATTTCCATACCGCACATATCAATAGTTTGGCGAGAAAATGAGAA
ACGAATGGTTTCAGAAATGAACAGAATGATTGAACTTATTATTAATTCTGGTAATGGCAAAATTATTCCAGTGAATGAGA
TTCTCAATATTCCATTTACCAAACAAATTTTAAGCAAATCAGTTGCTATTAAAAGCGATGCTCCACCCCCTGGTTACTAC
ATACACGAGGTAGGAGGAGCACCAATGGGAAATGACAAAGGAAATAGTGTTTTAGACAACTGGAATCGTCTATGGGAATG
CAACAATGTATTAGTAGTTGATGGAGCTTGCTGGCCTACTTCATCTTGGCAAAGCCCAACATTAACAATGATGGCAATAA
CTAAGAGAGCTTGCGAAAAGGCAATTAGAGACTTTAAAGGTTAA

Upstream 100 bases:

>100_bases
CAACGGTCTATTAACTAACCCTATGATTTAATATAAATCTTACATATTAAAAAAATAATTCCATAAATCTACCAAATTCA
AAATATACAACTTCCAAAAA

Downstream 100 bases:

>100_bases
AAATATCATTTAAGTATCTTTCAGTAACAGCCCTATCATCAGAACCATTTTGAAAGAGAAAATTAGCGATAGCTGAGCTA
ATAAGCTTGGATTGATCCCA

Product: glucose-methanol-choline (GMC) oxidoreductase:NAD binding site

Products: NA

Alternate protein names: Oxidoreductase; Choline Dehydrogenase; GMC Family Oxidoreductase; GMC Oxidoreductase Family Protein; Oxidoreductase Protein; Glucoside 3-Dehydrogenase; Fad Dependent Oxidoreductase; Choline Dehydrogenase And Flavoproteins-Like Protein; Oxidoreductase GMC Family; Dehydrogluconate Dehydrogenase; Gluconate 2-Dehydrogenase; Oxidoreductase Chain; GMC Oxidoreductase Family; Gluconate Dehydrogenase; Oxidoreductase GMC Family Protein; Glucose Dehydrogenase Subunit Alpha

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MIDKPYEVIIIGSGATGGMAALTMAKAGVRVLVIERGPELEIKQANGTEPCNMIRRLLGVTTGNYQNQPQHPGFWKSNPL
LYANKKANPYTHPPKAPFMWTQGNQVGGRSLTWGGITLRLSEEDFEASKEKEYNLEWPISYKDLESHYSEIESFLKIYGN
KDDLNQLPNGEYIGKLPFTESESRFASNIKENLNLPFIHSRGFGPNEDKTKWPRYSSLGSTLKEAARLGKIEILSNHIVD
KLVLNKDRKSAKSIIVVNQKNGERSELESKLIILCSSTIQTIRILLSSEESNNSNGLIDPSNSLGMNLMDHISTCRFFTV
PIDKNFNDYSDKNNNHLLTGAGSFFIPIGRESSTKKNFVGGYGIWGGIDRFEPPEVFKKYKNTKTGFLIGHGEVLPNKKN
TVSLSNTNDLYGISIPHISIVWRENEKRMVSEMNRMIELIINSGNGKIIPVNEILNIPFTKQILSKSVAIKSDAPPPGYY
IHEVGGAPMGNDKGNSVLDNWNRLWECNNVLVVDGACWPTSSWQSPTLTMMAITKRACEKAIRDFKG

Sequences:

>Translated_547_residues
MIDKPYEVIIIGSGATGGMAALTMAKAGVRVLVIERGPELEIKQANGTEPCNMIRRLLGVTTGNYQNQPQHPGFWKSNPL
LYANKKANPYTHPPKAPFMWTQGNQVGGRSLTWGGITLRLSEEDFEASKEKEYNLEWPISYKDLESHYSEIESFLKIYGN
KDDLNQLPNGEYIGKLPFTESESRFASNIKENLNLPFIHSRGFGPNEDKTKWPRYSSLGSTLKEAARLGKIEILSNHIVD
KLVLNKDRKSAKSIIVVNQKNGERSELESKLIILCSSTIQTIRILLSSEESNNSNGLIDPSNSLGMNLMDHISTCRFFTV
PIDKNFNDYSDKNNNHLLTGAGSFFIPIGRESSTKKNFVGGYGIWGGIDRFEPPEVFKKYKNTKTGFLIGHGEVLPNKKN
TVSLSNTNDLYGISIPHISIVWRENEKRMVSEMNRMIELIINSGNGKIIPVNEILNIPFTKQILSKSVAIKSDAPPPGYY
IHEVGGAPMGNDKGNSVLDNWNRLWECNNVLVVDGACWPTSSWQSPTLTMMAITKRACEKAIRDFKG
>Mature_547_residues
MIDKPYEVIIIGSGATGGMAALTMAKAGVRVLVIERGPELEIKQANGTEPCNMIRRLLGVTTGNYQNQPQHPGFWKSNPL
LYANKKANPYTHPPKAPFMWTQGNQVGGRSLTWGGITLRLSEEDFEASKEKEYNLEWPISYKDLESHYSEIESFLKIYGN
KDDLNQLPNGEYIGKLPFTESESRFASNIKENLNLPFIHSRGFGPNEDKTKWPRYSSLGSTLKEAARLGKIEILSNHIVD
KLVLNKDRKSAKSIIVVNQKNGERSELESKLIILCSSTIQTIRILLSSEESNNSNGLIDPSNSLGMNLMDHISTCRFFTV
PIDKNFNDYSDKNNNHLLTGAGSFFIPIGRESSTKKNFVGGYGIWGGIDRFEPPEVFKKYKNTKTGFLIGHGEVLPNKKN
TVSLSNTNDLYGISIPHISIVWRENEKRMVSEMNRMIELIINSGNGKIIPVNEILNIPFTKQILSKSVAIKSDAPPPGYY
IHEVGGAPMGNDKGNSVLDNWNRLWECNNVLVVDGACWPTSSWQSPTLTMMAITKRACEKAIRDFKG

Specific function: Probably Accepts Electrons From Ydiq/Ydir And Reduces A Quinone. [C]

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.5.5.- [C]

Molecular weight: Translated: 61136; Mature: 61136

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKPYEVIIIGSGATGGMAALTMAKAGVRVLVIERGPELEIKQANGTEPCNMIRRLLGV
CCCCCEEEEEEECCCCCCHHHHHHHHCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHCC
TTGNYQNQPQHPGFWKSNPLLYANKKANPYTHPPKAPFMWTQGNQVGGRSLTWGGITLRL
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEECCEEEEE
SEEDFEASKEKEYNLEWPISYKDLESHYSEIESFLKIYGNKDDLNQLPNGEYIGKLPFTE
CCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEECCCCC
SESRFASNIKENLNLPFIHSRGFGPNEDKTKWPRYSSLGSTLKEAARLGKIEILSNHIVD
CHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHH
KLVLNKDRKSAKSIIVVNQKNGERSELESKLIILCSSTIQTIRILLSSEESNNSNGLIDP
HHHHCCCCCCCCEEEEEECCCCCHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCCCCEECC
SNSLGMNLMDHISTCRFFTVPIDKNFNDYSDKNNNHLLTGAGSFFIPIGRESSTKKNFVG
CCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCC
GYGIWGGIDRFEPPEVFKKYKNTKTGFLIGHGEVLPNKKNTVSLSNTNDLYGISIPHISI
CCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEECCEEEE
VWRENEKRMVSEMNRMIELIINSGNGKIIPVNEILNIPFTKQILSKSVAIKSDAPPPGYY
EEECCHHHHHHHHHHHEEEEEECCCCCEEEHHHHHCCCHHHHHHHHHEEECCCCCCCCEE
IHEVGGAPMGNDKGNSVLDNWNRLWECNNVLVVDGACWPTSSWQSPTLTMMAITKRACEK
EEECCCCCCCCCCCCHHHHHHHHHEECCCEEEECCCCCCCCCCCCCCEEHHHHHHHHHHH
AIRDFKG
HHHHCCC
>Mature Secondary Structure
MIDKPYEVIIIGSGATGGMAALTMAKAGVRVLVIERGPELEIKQANGTEPCNMIRRLLGV
CCCCCEEEEEEECCCCCCHHHHHHHHCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHCC
TTGNYQNQPQHPGFWKSNPLLYANKKANPYTHPPKAPFMWTQGNQVGGRSLTWGGITLRL
CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEECCEEEEE
SEEDFEASKEKEYNLEWPISYKDLESHYSEIESFLKIYGNKDDLNQLPNGEYIGKLPFTE
CCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEECCCCC
SESRFASNIKENLNLPFIHSRGFGPNEDKTKWPRYSSLGSTLKEAARLGKIEILSNHIVD
CHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHH
KLVLNKDRKSAKSIIVVNQKNGERSELESKLIILCSSTIQTIRILLSSEESNNSNGLIDP
HHHHCCCCCCCCEEEEEECCCCCHHHHCCEEEEEEHHHHHHHHHHHCCCCCCCCCCEECC
SNSLGMNLMDHISTCRFFTVPIDKNFNDYSDKNNNHLLTGAGSFFIPIGRESSTKKNFVG
CCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCC
GYGIWGGIDRFEPPEVFKKYKNTKTGFLIGHGEVLPNKKNTVSLSNTNDLYGISIPHISI
CCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEECCEEEE
VWRENEKRMVSEMNRMIELIINSGNGKIIPVNEILNIPFTKQILSKSVAIKSDAPPPGYY
EEECCHHHHHHHHHHHEEEEEECCCCCEEEHHHHHCCCHHHHHHHHHEEECCCCCCCCEE
IHEVGGAPMGNDKGNSVLDNWNRLWECNNVLVVDGACWPTSSWQSPTLTMMAITKRACEK
EEECCCCCCCCCCCCHHHHHHHHHEECCCEEEECCCCCCCCCCCCCCEEHHHHHHHHHHH
AIRDFKG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA