Click here to switch to the map view.

The map label for this gene is ccmK [H]

Identifier: 124025321

GI number: 124025321

Start: 555761

End: 556309

Strand: Direct

Name: ccmK [H]

Synonym: NATL1_06101

Alternate gene names: 124025321

Gene position: 555761-556309 (Clockwise)

Preceding gene: 124025320

Following gene: 124025322

Centisome position: 29.8

GC content: 40.98

Gene sequence:

>549_bases
ATGACTAACTCTTCAAATCGTCGACCAAAAAGTAGTAATAAAACTATTAAGCCTAAAGATCAGGTTGTTGATGTTACTCC
TTTGAATTCAACTACTAAATCAAAAACCTCTTCAAGGATACAGTCTTCCTCAGCTGAAAAAGCATCTAATACTAAAAGCA
TTCCTAGTGCTAAAAATCTATCCAATGCTTCCGAGGGTGGGGGCTCATTTAATGCCCGAATTGGACAAAACAAAGCTTTT
GAAACTAAGTCAAATTTTGGAATAGCTCTAGGAATGATTGAAACTCGTGGCCTTGTACCAGCAATAGAAGCAGCAGATGC
AATGACTAAGGCTGCTGAAGTTAATTTGATCGTTAAAGAACTCGTTGGTGGAGGATATGTAACAGTAATGGTTCGTGGTG
AGACTGGTGCTGTAAATGCTTCAGTAAGAGCAGGTGCTGATGCCTGTGAGCGCGTTGGAGATGGATTAGTAGCTGCACAT
ATCATTGCCCGACCTCATGGCGAGATTGAGCCAGCATTGAGAGGAAGTGGAGCAAAAAGGAGAAGTTAA

Upstream 100 bases:

>100_bases
TTCAAACTGATTTAACTATTGGTGGGATTATTGATCATTGGAATCCTGATGATTAGCCTGACTGCTATTCAATAAAACTT
GATTTTATAAATTCCTAACT

Downstream 100 bases:

>100_bases
GTAGTTTTTGATTTATAAATTATTTCTTCAATCAATTCACGATGTAGTAGTTTTTATAAGAGAGAAGGTTTTTTCATGGA
AGGGTGGAGGCAAAAAAAAA

Product: carboxysome structural protein CsoS1

Products: NA

Alternate protein names: Carboxysome shell protein CsoS1 [H]

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTNSSNRRPKSSNKTIKPKDQVVDVTPLNSTTKSKTSSRIQSSSAEKASNTKSIPSAKNLSNASEGGGSFNARIGQNKAF
ETKSNFGIALGMIETRGLVPAIEAADAMTKAAEVNLIVKELVGGGYVTVMVRGETGAVNASVRAGADACERVGDGLVAAH
IIARPHGEIEPALRGSGAKRRS

Sequences:

>Translated_182_residues
MTNSSNRRPKSSNKTIKPKDQVVDVTPLNSTTKSKTSSRIQSSSAEKASNTKSIPSAKNLSNASEGGGSFNARIGQNKAF
ETKSNFGIALGMIETRGLVPAIEAADAMTKAAEVNLIVKELVGGGYVTVMVRGETGAVNASVRAGADACERVGDGLVAAH
IIARPHGEIEPALRGSGAKRRS
>Mature_181_residues
TNSSNRRPKSSNKTIKPKDQVVDVTPLNSTTKSKTSSRIQSSSAEKASNTKSIPSAKNLSNASEGGGSFNARIGQNKAFE
TKSNFGIALGMIETRGLVPAIEAADAMTKAAEVNLIVKELVGGGYVTVMVRGETGAVNASVRAGADACERVGDGLVAAHI
IARPHGEIEPALRGSGAKRRS

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=82, Percent_Identity=57.3170731707317, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 18864; Mature: 18733

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSSNRRPKSSNKTIKPKDQVVDVTPLNSTTKSKTSSRIQSSSAEKASNTKSIPSAKNL
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
SNASEGGGSFNARIGQNKAFETKSNFGIALGMIETRGLVPAIEAADAMTKAAEVNLIVKE
CCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LVGGGYVTVMVRGETGAVNASVRAGADACERVGDGLVAAHIIARPHGEIEPALRGSGAKR
HHCCCEEEEEEECCCCCCCCHHHCCHHHHHHHCCCCEEEHHHHCCCCCCCHHHCCCCCCC
RS
CC
>Mature Secondary Structure 
TNSSNRRPKSSNKTIKPKDQVVDVTPLNSTTKSKTSSRIQSSSAEKASNTKSIPSAKNL
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
SNASEGGGSFNARIGQNKAFETKSNFGIALGMIETRGLVPAIEAADAMTKAAEVNLIVKE
CCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LVGGGYVTVMVRGETGAVNASVRAGADACERVGDGLVAAHIIARPHGEIEPALRGSGAKR
HHCCCEEEEEEECCCCCCCCHHHCCHHHHHHHCCCCEEEHHHHCCCCCCCHHHCCCCCCC
RS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917486 [H]