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The map label for this gene is csd [H]

Identifier: 124025178

GI number: 124025178

Start: 426553

End: 427755

Strand: Reverse

Name: csd [H]

Synonym: NATL1_04651

Alternate gene names: 124025178

Gene position: 427755-426553 (Counterclockwise)

Preceding gene: 124025184

Following gene: 124025174

Centisome position: 22.94

GC content: 37.07

Gene sequence:

>1203_bases
ATGTCACCAATATTGTTCAAAGACAATATGCCCGCGCTGCAAAATAAAGCTTATTTCAATTATGGAGGTCAAGGTCCACT
CCCAACTCAATCATTAAATGCAATAACTTCTAGTTGGCAAACAATTCAAAAATTAGGTCCATTCACAAATAATGTTTGGC
CATACATTACGAAAGAAGTAATAACCACAAAAAATCTTATAGCGGAGATTTGCTCTATACATCCCAAGAGAATTGCATTT
ACTGAAAATGTCACCTCCGGATGTGTCTTGCCTTTACTAGGGCTACCATTTTCTGATGGTGATAATTTATTACTTAGCGA
TTGTGAGCATCCTGGGATAGTCGCAGCATGCAAAGAGTTAGCTCGAAAAAAGAATCTAACAATAGCAATACTTCCTGTAT
CAAAGTTATGCAATGGTAACGACAAGAAAGATGAGACGTATAACACAGTACTTAAATTGATAGATGAATATCTTCAAAAA
AATACGAAGCTTGTTGTTCTCTCACATCTCCTTTGGAATACAGGGCAAATTATGCCAATTGAACTTATTTCAAAAAGACT
TAAAGAGCATTCAAGCAAACCTTATTTATTAGTTGATGCGGCTCAAAGTTTTTGTCATATTCCAAGCAAAGGTGCTTGTG
ATAATGCAGACATCTATGCGTTTACAGGACATAAATGGGCTTACGGGCCTGAGGGCTTGGGCGCTGTTGTTCTTTCAGCA
AGAGTTCTAGAAGAATCAAGCCCAACATTGATTGGTTGGAAAAGCTTAAAAGCTGAAGAAGGAATACATATAAATAATAA
AGCTCCTTTTCATTCTGATGCCAGACGTTTTGAGATAGCGACTTCTTGTATCCCTCTTTTAGCTGGTCTCAGAAGCTCTC
TAGCAATGCTAAAAAATGAAGGTAATGAGACTGAGCGCTTTTTTAAGATTAAAAGCCTCAGCTGTATCCTGTGGGAGAAA
CTCAACCAAATCAAAAACATTGAGCTTGTTTTAAATAGTCCTCCACCTTCAGGAATTATAAGTTTTACCATTAGTGGGAA
CCATTCTCCTGAAGAGGTTGTCGATTATCTTGGTAAAGAGAATTTATGGATAAGAGTCCTCGAGGATCCTAAATGGCTTC
GTGCTTGCGTTCACATAACTACAGATTCAAACGAAATAGATAACCTTGTTATTGGTCTAAAAAATTTCATCTCGACTAAG
TAG

Upstream 100 bases:

>100_bases
AGGCGTTAGGTTGACATAACTAGAAGACAGACACAAATTGGTAAGTTGGCAAAAAAAAGATATTCTTAGTAACCACAACT
AAGAAAAAAAAAAAAAAGAT

Downstream 100 bases:

>100_bases
TCAAATAACATCTGTTCTTAAAGATAGTGCTTTTCTAGCTTGTTCACGATCGTCAAAATAAATTGTCTGATCTTTTAGAA
TTTGATAATCCTCATGACCT

Product: putative L-cysteine/cystine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MSPILFKDNMPALQNKAYFNYGGQGPLPTQSLNAITSSWQTIQKLGPFTNNVWPYITKEVITTKNLIAEICSIHPKRIAF
TENVTSGCVLPLLGLPFSDGDNLLLSDCEHPGIVAACKELARKKNLTIAILPVSKLCNGNDKKDETYNTVLKLIDEYLQK
NTKLVVLSHLLWNTGQIMPIELISKRLKEHSSKPYLLVDAAQSFCHIPSKGACDNADIYAFTGHKWAYGPEGLGAVVLSA
RVLEESSPTLIGWKSLKAEEGIHINNKAPFHSDARRFEIATSCIPLLAGLRSSLAMLKNEGNETERFFKIKSLSCILWEK
LNQIKNIELVLNSPPPSGIISFTISGNHSPEEVVDYLGKENLWIRVLEDPKWLRACVHITTDSNEIDNLVIGLKNFISTK

Sequences:

>Translated_400_residues
MSPILFKDNMPALQNKAYFNYGGQGPLPTQSLNAITSSWQTIQKLGPFTNNVWPYITKEVITTKNLIAEICSIHPKRIAF
TENVTSGCVLPLLGLPFSDGDNLLLSDCEHPGIVAACKELARKKNLTIAILPVSKLCNGNDKKDETYNTVLKLIDEYLQK
NTKLVVLSHLLWNTGQIMPIELISKRLKEHSSKPYLLVDAAQSFCHIPSKGACDNADIYAFTGHKWAYGPEGLGAVVLSA
RVLEESSPTLIGWKSLKAEEGIHINNKAPFHSDARRFEIATSCIPLLAGLRSSLAMLKNEGNETERFFKIKSLSCILWEK
LNQIKNIELVLNSPPPSGIISFTISGNHSPEEVVDYLGKENLWIRVLEDPKWLRACVHITTDSNEIDNLVIGLKNFISTK
>Mature_399_residues
SPILFKDNMPALQNKAYFNYGGQGPLPTQSLNAITSSWQTIQKLGPFTNNVWPYITKEVITTKNLIAEICSIHPKRIAFT
ENVTSGCVLPLLGLPFSDGDNLLLSDCEHPGIVAACKELARKKNLTIAILPVSKLCNGNDKKDETYNTVLKLIDEYLQKN
TKLVVLSHLLWNTGQIMPIELISKRLKEHSSKPYLLVDAAQSFCHIPSKGACDNADIYAFTGHKWAYGPEGLGAVVLSAR
VLEESSPTLIGWKSLKAEEGIHINNKAPFHSDARRFEIATSCIPLLAGLRSSLAMLKNEGNETERFFKIKSLSCILWEKL
NQIKNIELVLNSPPPSGIISFTISGNHSPEEVVDYLGKENLWIRVLEDPKWLRACVHITTDSNEIDNLVIGLKNFISTK

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=314, Percent_Identity=25.4777070063694, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 44435; Mature: 44304

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPILFKDNMPALQNKAYFNYGGQGPLPTQSLNAITSSWQTIQKLGPFTNNVWPYITKEV
CCCCEECCCCCHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
ITTKNLIAEICSIHPKRIAFTENVTSGCVLPLLGLPFSDGDNLLLSDCEHPGIVAACKEL
HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH
ARKKNLTIAILPVSKLCNGNDKKDETYNTVLKLIDEYLQKNTKLVVLSHLLWNTGQIMPI
HHHCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCEEEH
ELISKRLKEHSSKPYLLVDAAQSFCHIPSKGACDNADIYAFTGHKWAYGPEGLGAVVLSA
HHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH
RVLEESSPTLIGWKSLKAEEGIHINNKAPFHSDARRFEIATSCIPLLAGLRSSLAMLKNE
HHHHCCCCCEEEEHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNETERFFKIKSLSCILWEKLNQIKNIELVLNSPPPSGIISFTISGNHSPEEVVDYLGKE
CCCHHHHEEHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHCCC
NLWIRVLEDPKWLRACVHITTDSNEIDNLVIGLKNFISTK
CEEEEEECCCHHEEEEEEEECCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SPILFKDNMPALQNKAYFNYGGQGPLPTQSLNAITSSWQTIQKLGPFTNNVWPYITKEV
CCCEECCCCCHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
ITTKNLIAEICSIHPKRIAFTENVTSGCVLPLLGLPFSDGDNLLLSDCEHPGIVAACKEL
HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH
ARKKNLTIAILPVSKLCNGNDKKDETYNTVLKLIDEYLQKNTKLVVLSHLLWNTGQIMPI
HHHCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCEEEH
ELISKRLKEHSSKPYLLVDAAQSFCHIPSKGACDNADIYAFTGHKWAYGPEGLGAVVLSA
HHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH
RVLEESSPTLIGWKSLKAEEGIHINNKAPFHSDARRFEIATSCIPLLAGLRSSLAMLKNE
HHHHCCCCCEEEEHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNETERFFKIKSLSCILWEKLNQIKNIELVLNSPPPSGIISFTISGNHSPEEVVDYLGKE
CCCHHHHEEHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHCCC
NLWIRVLEDPKWLRACVHITTDSNEIDNLVIGLKNFISTK
CEEEEEECCCHHEEEEEEEECCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA