Click here to switch to the map view.

The map label for this gene is fliA [C]

Identifier: 124023131

GI number: 124023131

Start: 1221736

End: 1222545

Strand: Reverse

Name: fliA [C]

Synonym: P9303_14271

Alternate gene names: 124023131

Gene position: 1222545-1221736 (Counterclockwise)

Preceding gene: 124023132

Following gene: 124023127

Centisome position: 45.57

GC content: 46.17

Gene sequence:

>810_bases
ATGTCAATAGAAAGTCAAGTCATGGCACAAACTTCTTACAAAACCTTGCTGAGAAAGAGAGCAAAGTGTTCTAGGTATCA
GCGTTCTCTCTCATTGCCCGAATCGATACAAAAACGCAATCAGGCTGTAATTGAACACCTTGGATTGGCACACCTTGCAG
CAACTCGCCAGGCCACCCGTGGCGGAGAGGAACTGGATGATCTCATTCAAGAAGCAAGACTGGGATTAATCATGGCGATG
GAGAAATTCGATGCCAATCGTGGATTTAAAGTAAGTAGCTATGCAATGGCCCGTGCCAACGGCCAGATCCTTCATTTCCG
CAGAGACAGAAGCCAGATCGTGAGAGTGCCCTGGCGACTGAGAGACCTATATACCCGCGGCATGAGACTCCAGCAGATGC
AGCAGAATGATGGGTTAAACCCGCTCACTGAAGAGCAGCTAGCTGCTCAATTAAATGTAAGTTCAGACCGCTGGCATCAA
GCTGCCGAAGCCGTATGGCAAACAAACCTTGTATCTCTTGATGCCAAAGAGACTTCAACAGCAGGCAATCATGCTGAGAA
GAGAGTTTCATTATTAGAATTGCTCAAATCACCAAAGCAGAAAGAACCGGATCTGCAACAACAATGGCTAAAAAAGGCTA
TTGAGCGTCTAACACCCCACCAGCAACACTTGCTTTACGCCCATTACATCGATGACATCAGCTTGAGACAGTTAGCAAAG
CGCGAAAAGATGAAGGAGAACATGCTGCGAAGGGTTTTGCGAGGTTTAATTAAACAACTTCAACTTTGGTCCACAAACAA
ATCTGATTAG

Upstream 100 bases:

>100_bases
ACAAACTTCACTCCTACGGTTGGCTGAAATCACCCCTAAGGAATCCGATGTTCATCCTTTAGATGGTTTACCAGCGTTGC
AGAAAAGCAGAAAGTTAAGA

Downstream 100 bases:

>100_bases
CTAATCAAGCAGCCAATCCAAGCCAAGCGGCGATTGCGATGGCAAAAACAGCAGCAAAGCTTGTCTGTAAGCCATTGACA
AGTTCATTACTCAGCCAACT

Product: type III sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; RNA Polymerase Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; FliA/WhiG Family RNA Polymerase Sigma Factor; Type III Sigma Factor; Sigma Factor; RNA Polymerase Sigma Factor WhiG; RNA Polymerase Sigma-G Factor; RNA Polymerase Sigma-F Factor; FliA/WhiG Subfamily RNA Polymerase Sigma-28 Factor; RNA Polymerase Sigma-B Factor; RNA Polymerase Sigma Factor For Flagellar Operon; FliA/WhiG Subfamily RNA Polymerase Sigma; B/F/G Subfamily RNA Polymerase Sigma-28 Subunit; Group 3 RNA Polymerase Sigma Factor; RinA Family Phage Transcriptional Regulator; Sigma-70 Region 2-Containing Protein; DNA-Directed RNA Polymeracialized Sigma Subunit-Like; Sigma-70 Region 2 Domain-Containing Protein; SigH RNA Polymerase Sigma Factor; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor SigH

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSIESQVMAQTSYKTLLRKRAKCSRYQRSLSLPESIQKRNQAVIEHLGLAHLAATRQATRGGEELDDLIQEARLGLIMAM
EKFDANRGFKVSSYAMARANGQILHFRRDRSQIVRVPWRLRDLYTRGMRLQQMQQNDGLNPLTEEQLAAQLNVSSDRWHQ
AAEAVWQTNLVSLDAKETSTAGNHAEKRVSLLELLKSPKQKEPDLQQQWLKKAIERLTPHQQHLLYAHYIDDISLRQLAK
REKMKENMLRRVLRGLIKQLQLWSTNKSD

Sequences:

>Translated_269_residues
MSIESQVMAQTSYKTLLRKRAKCSRYQRSLSLPESIQKRNQAVIEHLGLAHLAATRQATRGGEELDDLIQEARLGLIMAM
EKFDANRGFKVSSYAMARANGQILHFRRDRSQIVRVPWRLRDLYTRGMRLQQMQQNDGLNPLTEEQLAAQLNVSSDRWHQ
AAEAVWQTNLVSLDAKETSTAGNHAEKRVSLLELLKSPKQKEPDLQQQWLKKAIERLTPHQQHLLYAHYIDDISLRQLAK
REKMKENMLRRVLRGLIKQLQLWSTNKSD
>Mature_268_residues
SIESQVMAQTSYKTLLRKRAKCSRYQRSLSLPESIQKRNQAVIEHLGLAHLAATRQATRGGEELDDLIQEARLGLIMAME
KFDANRGFKVSSYAMARANGQILHFRRDRSQIVRVPWRLRDLYTRGMRLQQMQQNDGLNPLTEEQLAAQLNVSSDRWHQA
AEAVWQTNLVSLDAKETSTAGNHAEKRVSLLELLKSPKQKEPDLQQQWLKKAIERLTPHQQHLLYAHYIDDISLRQLAKR
EKMKENMLRRVLRGLIKQLQLWSTNKSD

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Alternative Sigma Factor Is Specific For Class 3 Flagellar Operons. [C]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31216; Mature: 31085

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIESQVMAQTSYKTLLRKRAKCSRYQRSLSLPESIQKRNQAVIEHLGLAHLAATRQATR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGEELDDLIQEARLGLIMAMEKFDANRGFKVSSYAMARANGQILHFRRDRSQIVRVPWRL
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHCCHHH
RDLYTRGMRLQQMQQNDGLNPLTEEQLAAQLNVSSDRWHQAAEAVWQTNLVSLDAKETST
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCHHHCC
AGNHAEKRVSLLELLKSPKQKEPDLQQQWLKKAIERLTPHQQHLLYAHYIDDISLRQLAK
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHH
REKMKENMLRRVLRGLIKQLQLWSTNKSD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SIESQVMAQTSYKTLLRKRAKCSRYQRSLSLPESIQKRNQAVIEHLGLAHLAATRQATR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGEELDDLIQEARLGLIMAMEKFDANRGFKVSSYAMARANGQILHFRRDRSQIVRVPWRL
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHCCHHH
RDLYTRGMRLQQMQQNDGLNPLTEEQLAAQLNVSSDRWHQAAEAVWQTNLVSLDAKETST
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCHHHCC
AGNHAEKRVSLLELLKSPKQKEPDLQQQWLKKAIERLTPHQQHLLYAHYIDDISLRQLAK
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHH
REKMKENMLRRVLRGLIKQLQLWSTNKSD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA