Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
---|---|
Accession | NC_008820 |
Length | 2,682,675 |
Click here to switch to the map view.
The map label for this gene is yvbG [H]
Identifier: 124022747
GI number: 124022747
Start: 943019
End: 943636
Strand: Reverse
Name: yvbG [H]
Synonym: P9303_10401
Alternate gene names: 124022747
Gene position: 943636-943019 (Counterclockwise)
Preceding gene: 124022749
Following gene: 124022744
Centisome position: 35.18
GC content: 44.01
Gene sequence:
>618_bases ATGTCTCTTCTAAACACTGCCATTGGAATCTTTACTGTTGCCAACCCTATTGGCAATCTGCCGATCTATCTTTCATTCAC AGATGGAGATCAAAAAACCGATAAGGCAATCGCACGCAACAGTGCTTTTACCTTCCTAATCGCACTTCTCTTGGCTACAT GGCTCGGAAATGATTTGCTGGCAATTTTCGGCATAAGCCAAGGAGCCTTTCAAATATCTGGTGGGTTAATTGTTATCTTG ATCGGCCTTTCTATGCTCCGATCCAAACCACCAGAGGAGCACCATGACCCAGCCTCGATTGATCGAGATAAGGGTTCCTC AGGGAAAGGAATCGTGCCTATCGGCATTCCTCTTCTTGCAGGCCCTGGCACACTGACGATTGCAATTGCCGACCCGGTGA ATTCTTCCATCGATGGCAAAATTTCATTGAGCTTAATAGTCTTAATACTAACTTTGATGATCTATCTTATTTTTGATGCG GCCGAGATGCTTTCCTCCAAGATTAGCATATCAGCCCTGCAAGTGCTAACAAAAGTAATGGGAATAGTGCTTACATCTAT TGCTGTTCAGATGTTGCTTGATGGCCTCAAAATCTCGTTCCCAAGCATTTCACAATAA
Upstream 100 bases:
>100_bases AGAGGCGCTCACAGATCAACAACACCTGGCATAGAATTAACATCTGCGGTTCAATCAGACCTGTAAGTGTTATCAACAAA AACGATTAATTGCGATCTTT
Downstream 100 bases:
>100_bases GCTATATATGATCCTCAAGGCAATTGCTTGAGGATCATATATTGACAAAATAGTCTCAACAAACCAAGGTCCCTCTTTAA AGGGAGCGCGGTCGATTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MSLLNTAIGIFTVANPIGNLPIYLSFTDGDQKTDKAIARNSAFTFLIALLLATWLGNDLLAIFGISQGAFQISGGLIVIL IGLSMLRSKPPEEHHDPASIDRDKGSSGKGIVPIGIPLLAGPGTLTIAIADPVNSSIDGKISLSLIVLILTLMIYLIFDA AEMLSSKISISALQVLTKVMGIVLTSIAVQMLLDGLKISFPSISQ
Sequences:
>Translated_205_residues MSLLNTAIGIFTVANPIGNLPIYLSFTDGDQKTDKAIARNSAFTFLIALLLATWLGNDLLAIFGISQGAFQISGGLIVIL IGLSMLRSKPPEEHHDPASIDRDKGSSGKGIVPIGIPLLAGPGTLTIAIADPVNSSIDGKISLSLIVLILTLMIYLIFDA AEMLSSKISISALQVLTKVMGIVLTSIAVQMLLDGLKISFPSISQ >Mature_204_residues SLLNTAIGIFTVANPIGNLPIYLSFTDGDQKTDKAIARNSAFTFLIALLLATWLGNDLLAIFGISQGAFQISGGLIVILI GLSMLRSKPPEEHHDPASIDRDKGSSGKGIVPIGIPLLAGPGTLTIAIADPVNSSIDGKISLSLIVLILTLMIYLIFDAA EMLSSKISISALQVLTKVMGIVLTSIAVQMLLDGLKISFPSISQ
Specific function: Unknown
COG id: COG2095
COG function: function code U; Multiple antibiotic transporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0056 (marC) family [H]
Homologues:
Organism=Escherichia coli, GI1787494, Length=202, Percent_Identity=28.2178217821782, Blast_Score=95, Evalue=3e-21, Organism=Escherichia coli, GI1789842, Length=201, Percent_Identity=25.3731343283582, Blast_Score=60, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002771 [H]
Pfam domain/function: PF01914 MarC [H]
EC number: NA
Molecular weight: Translated: 21528; Mature: 21397
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLNTAIGIFTVANPIGNLPIYLSFTDGDQKTDKAIARNSAFTFLIALLLATWLGNDLL CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE AIFGISQGAFQISGGLIVILIGLSMLRSKPPEEHHDPASIDRDKGSSGKGIVPIGIPLLA EEEECCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEE GPGTLTIAIADPVNSSIDGKISLSLIVLILTLMIYLIFDAAEMLSSKISISALQVLTKVM CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIVLTSIAVQMLLDGLKISFPSISQ HHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SLLNTAIGIFTVANPIGNLPIYLSFTDGDQKTDKAIARNSAFTFLIALLLATWLGNDLL CHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE AIFGISQGAFQISGGLIVILIGLSMLRSKPPEEHHDPASIDRDKGSSGKGIVPIGIPLLA EEEECCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEE GPGTLTIAIADPVNSSIDGKISLSLIVLILTLMIYLIFDAAEMLSSKISISALQVLTKVM CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIVLTSIAVQMLLDGLKISFPSISQ HHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]