Click here to switch to the map view.

The map label for this gene is yfmR [H]

Identifier: 124022109

GI number: 124022109

Start: 400178

End: 402136

Strand: Reverse

Name: yfmR [H]

Synonym: P9303_03991

Alternate gene names: 124022109

Gene position: 402136-400178 (Counterclockwise)

Preceding gene: 124022110

Following gene: 124022107

Centisome position: 14.99

GC content: 53.65

Gene sequence:

>1959_bases
GTGAGCCTGATCAGCCTGATAGAGGCCTCAAAAGACTTCGGCATCAACACCCTGTTTGCCGACCTCACCCTGCACATCAA
CGAAAGAGAACGTCTAGGGCTGATCGGACCGAATGGAGCCGGGAAATCGACGCTCCTGAAGGTGCTCGCCGGAGAAGAAC
CCCTCGGAGAGGGTGAAAGGAGGTGCTCAGCGCGATTACGCGTAGAGCTCGTGGGCCAAGAGAGCGCTGTAAACCCTGGC
CATACGGTGCTGCAAGAAGTCTTGGCCGGGTGCGGTGAAAAGAGAGAGCTGCTGCTGCGTTTCAACGAGCTCAGCAATTC
GATGGCCCGCAACCCCAACGATGCAACGCTTTTGGCTGAGTTAGGACAAGTCAGCCAGCGGATGGATGACGCTCAAGCCT
GGAGCTTGGAACAGCAATGTCAAGAGGTCCTTCAACGTCTTGGTATCACCGATCTAGAGCGGCCGGTTGAAGAACTCTCT
GGTGGGTATCGCAAGCGCGTCGGCCTTGCCTCCGCCTTGGTCGCCAGACCCGACGTTTTGCTGCTCGATGAGCCCACCAA
CCATCTCGATGCGGCAGCAGTTGAGTGGCTACAAAGTTGGCTCGATCGCTTTCCAGGTGCTTTGGTGCTTGTCACCCACG
ATCGCTACGTGCTCGATCGGGTGACACGCCGCATGGTGGAAGTAGACCGAGGCAAAGCCCATAACTATGCCGGCAACTAC
AGCACTTTTCTACAACAAAAGGCCGAACTTGAAGCTTCAGAAGCTTCCACTGCTCACAAGTTCAAAGGGGTTTTAAGACG
AGAGCTGGCCTGGTTGCGACAGGGTCCCAAAGCACGCAGTACCAAGCAGAAGGCACGCCTGCAGCGAATTGAGGAGATGC
GCGCCGAACCATTGCCGCAACTGCGGGGTTCCTTGAAGATGGCGAACGTAAGCAGGCGTATCGGCAAGCTAGTGATTGAG
GCGGAAGCCCTGCAAGTCACCGCCAATGGCAAGCCCGACAGTCCTCTGCTTCTAGACAACTTCACCTACAGCTTTAGTCC
AGAAGACCGCGTTGGCATCATCGGCCCGAATGGCAGTGGCAAATCCACATTGCTTGATTTAATTGCAGGCAGACGCCAAC
CCAATGGTGGAACACTGCGATTAGGTGAAACAGTGCACCTGGGATATCTCGACCAGCACACCGAAGACATCACCAAAGGC
AAGGGCCTAGATCGCAAAGTGATCGATTTTGTTGAAGAAGCTGCCTCTCAAATCATTCTGGGAGAAGAACAAATTACGGC
CTCTCAACTACTGGAACGCTTCCTATTTCCACCGGCTCAGCAGCACAGCCCACTGGGGAAGCTCTCTGGGGGAGAACGAC
GCCGACTCACACTCTGCCGGATGCTGATCCAAGCACCGAATGTGCTGCTGCTTGATGAACCCACCAACGACCTAGATATC
CAGACACTAAGCGTGCTGGAAGATTTCCTTGAGGATTTCCGCGGCTGCGTTGTCGTGGTCTCTCATGACCGCTATTTCCT
CGATCGCACAGTTGATCGTCTGTTCAACTTTGAGAATGGACAATTGAAACGTTTTGAGGGCAATTACAGCGCCTTTCTTG
AACAACAACGACGACAAGAGCGAGACTTCAACGAAGCAAATGAGCCCAAATCCAGCCTCCTTTTGCAGGATTCTGGCCCA
TCTAGAATATCCAAAAGATCCTCTCAAGAGGCAGAAAGCTCTTCACCCCAAGCCACAGAAACCAGCAAGCCAAGACGCCG
AAGCTTCAAGGAATCACGTGAACTAGAAGCTCTAAACATTGATATCCCACTGCTTGAAGCCAAGCGTTCTAACCTTGAAG
CTGCTTTGTCCGGTGGCGACGAAGACTTAACTCTGCTTAGTCAACAATTGGCCGAGCTGGTCGAAACATTGCACAAAGCA
GAGGAGCGCTGGCTCGAACTCAGCGAACTGGCCATATAA

Upstream 100 bases:

>100_bases
TGGTGTTAGCGCTGCGAAAGTTCGGCATGGATGCCGCTGCTGACGTCGGTGACAAGAGTGTGTTTGCTTACCTCAGTAAT
CAGCAAGCTAACGAAGCTCT

Downstream 100 bases:

>100_bases
GAGTGCGCTGACGTCGATATGTATGGAGCAATTCTGCATCATCTAATGTCCTTGCGAACAAGACTGAGTTAGTCGGAGTA
TCACAACACTGCCAACTGGT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 652; Mature: 651

Protein sequence:

>652_residues
MSLISLIEASKDFGINTLFADLTLHINERERLGLIGPNGAGKSTLLKVLAGEEPLGEGERRCSARLRVELVGQESAVNPG
HTVLQEVLAGCGEKRELLLRFNELSNSMARNPNDATLLAELGQVSQRMDDAQAWSLEQQCQEVLQRLGITDLERPVEELS
GGYRKRVGLASALVARPDVLLLDEPTNHLDAAAVEWLQSWLDRFPGALVLVTHDRYVLDRVTRRMVEVDRGKAHNYAGNY
STFLQQKAELEASEASTAHKFKGVLRRELAWLRQGPKARSTKQKARLQRIEEMRAEPLPQLRGSLKMANVSRRIGKLVIE
AEALQVTANGKPDSPLLLDNFTYSFSPEDRVGIIGPNGSGKSTLLDLIAGRRQPNGGTLRLGETVHLGYLDQHTEDITKG
KGLDRKVIDFVEEAASQIILGEEQITASQLLERFLFPPAQQHSPLGKLSGGERRRLTLCRMLIQAPNVLLLDEPTNDLDI
QTLSVLEDFLEDFRGCVVVVSHDRYFLDRTVDRLFNFENGQLKRFEGNYSAFLEQQRRQERDFNEANEPKSSLLLQDSGP
SRISKRSSQEAESSSPQATETSKPRRRSFKESRELEALNIDIPLLEAKRSNLEAALSGGDEDLTLLSQQLAELVETLHKA
EERWLELSELAI

Sequences:

>Translated_652_residues
MSLISLIEASKDFGINTLFADLTLHINERERLGLIGPNGAGKSTLLKVLAGEEPLGEGERRCSARLRVELVGQESAVNPG
HTVLQEVLAGCGEKRELLLRFNELSNSMARNPNDATLLAELGQVSQRMDDAQAWSLEQQCQEVLQRLGITDLERPVEELS
GGYRKRVGLASALVARPDVLLLDEPTNHLDAAAVEWLQSWLDRFPGALVLVTHDRYVLDRVTRRMVEVDRGKAHNYAGNY
STFLQQKAELEASEASTAHKFKGVLRRELAWLRQGPKARSTKQKARLQRIEEMRAEPLPQLRGSLKMANVSRRIGKLVIE
AEALQVTANGKPDSPLLLDNFTYSFSPEDRVGIIGPNGSGKSTLLDLIAGRRQPNGGTLRLGETVHLGYLDQHTEDITKG
KGLDRKVIDFVEEAASQIILGEEQITASQLLERFLFPPAQQHSPLGKLSGGERRRLTLCRMLIQAPNVLLLDEPTNDLDI
QTLSVLEDFLEDFRGCVVVVSHDRYFLDRTVDRLFNFENGQLKRFEGNYSAFLEQQRRQERDFNEANEPKSSLLLQDSGP
SRISKRSSQEAESSSPQATETSKPRRRSFKESRELEALNIDIPLLEAKRSNLEAALSGGDEDLTLLSQQLAELVETLHKA
EERWLELSELAI
>Mature_651_residues
SLISLIEASKDFGINTLFADLTLHINERERLGLIGPNGAGKSTLLKVLAGEEPLGEGERRCSARLRVELVGQESAVNPGH
TVLQEVLAGCGEKRELLLRFNELSNSMARNPNDATLLAELGQVSQRMDDAQAWSLEQQCQEVLQRLGITDLERPVEELSG
GYRKRVGLASALVARPDVLLLDEPTNHLDAAAVEWLQSWLDRFPGALVLVTHDRYVLDRVTRRMVEVDRGKAHNYAGNYS
TFLQQKAELEASEASTAHKFKGVLRRELAWLRQGPKARSTKQKARLQRIEEMRAEPLPQLRGSLKMANVSRRIGKLVIEA
EALQVTANGKPDSPLLLDNFTYSFSPEDRVGIIGPNGSGKSTLLDLIAGRRQPNGGTLRLGETVHLGYLDQHTEDITKGK
GLDRKVIDFVEEAASQIILGEEQITASQLLERFLFPPAQQHSPLGKLSGGERRRLTLCRMLIQAPNVLLLDEPTNDLDIQ
TLSVLEDFLEDFRGCVVVVSHDRYFLDRTVDRLFNFENGQLKRFEGNYSAFLEQQRRQERDFNEANEPKSSLLLQDSGPS
RISKRSSQEAESSSPQATETSKPRRRSFKESRELEALNIDIPLLEAKRSNLEAALSGGDEDLTLLSQQLAELVETLHKAE
ERWLELSELAI

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=553, Percent_Identity=30.379746835443, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI10947137, Length=539, Percent_Identity=28.3858998144712, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI27881506, Length=539, Percent_Identity=28.3858998144712, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI69354671, Length=536, Percent_Identity=28.9179104477612, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI10947135, Length=536, Percent_Identity=28.9179104477612, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI73747915, Length=238, Percent_Identity=24.7899159663866, Blast_Score=71, Evalue=4e-12,
Organism=Escherichia coli, GI2367384, Length=525, Percent_Identity=38.4761904761905, Blast_Score=346, Evalue=3e-96,
Organism=Escherichia coli, GI1787182, Length=665, Percent_Identity=34.1353383458647, Blast_Score=331, Evalue=8e-92,
Organism=Escherichia coli, GI1789751, Length=669, Percent_Identity=32.1375186846039, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI1787041, Length=532, Percent_Identity=29.3233082706767, Blast_Score=221, Evalue=9e-59,
Organism=Escherichia coli, GI1786975, Length=476, Percent_Identity=24.7899159663866, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI48994943, Length=491, Percent_Identity=23.4215885947047, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=31.25, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787089, Length=211, Percent_Identity=28.436018957346, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788165, Length=188, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787712, Length=255, Percent_Identity=26.2745098039216, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=28.1385281385281, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI48994997, Length=209, Percent_Identity=26.7942583732057, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788761, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789593, Length=215, Percent_Identity=26.9767441860465, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1786872, Length=235, Percent_Identity=27.2340425531915, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=29.8969072164948, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=27.8301886792453, Blast_Score=63, Evalue=8e-11,
Organism=Escherichia coli, GI48994883, Length=254, Percent_Identity=26.3779527559055, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI87081834, Length=205, Percent_Identity=27.3170731707317, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=543, Percent_Identity=29.8342541436464, Blast_Score=222, Evalue=5e-58,
Organism=Caenorhabditis elegans, GI17555318, Length=537, Percent_Identity=27.0018621973929, Blast_Score=199, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17553372, Length=541, Percent_Identity=29.3900184842884, Blast_Score=184, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI17567265, Length=301, Percent_Identity=27.5747508305648, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=239, Percent_Identity=25.1046025104602, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=303, Percent_Identity=24.0924092409241, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=226, Percent_Identity=23.8938053097345, Blast_Score=65, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6320874, Length=537, Percent_Identity=31.4711359404097, Blast_Score=216, Evalue=6e-57,
Organism=Saccharomyces cerevisiae, GI6321121, Length=552, Percent_Identity=27.8985507246377, Blast_Score=177, Evalue=4e-45,
Organism=Saccharomyces cerevisiae, GI6324314, Length=255, Percent_Identity=30.1960784313725, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6323278, Length=395, Percent_Identity=26.3291139240506, Blast_Score=121, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6325030, Length=389, Percent_Identity=26.9922879177378, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24641342, Length=539, Percent_Identity=29.8701298701299, Blast_Score=209, Evalue=6e-54,
Organism=Drosophila melanogaster, GI24666836, Length=554, Percent_Identity=30.14440433213, Blast_Score=209, Evalue=7e-54,
Organism=Drosophila melanogaster, GI24642252, Length=558, Percent_Identity=27.5985663082437, Blast_Score=204, Evalue=1e-52,
Organism=Drosophila melanogaster, GI18859989, Length=558, Percent_Identity=27.5985663082437, Blast_Score=204, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 72895; Mature: 72763

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLISLIEASKDFGINTLFADLTLHINERERLGLIGPNGAGKSTLLKVLAGEEPLGEGER
CCHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHCCCCCCCCHHH
RCSARLRVELVGQESAVNPGHTVLQEVLAGCGEKRELLLRFNELSNSMARNPNDATLLAE
HHHHHEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
LGQVSQRMDDAQAWSLEQQCQEVLQRLGITDLERPVEELSGGYRKRVGLASALVARPDVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEE
LLDEPTNHLDAAAVEWLQSWLDRFPGALVLVTHDRYVLDRVTRRMVEVDRGKAHNYAGNY
EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCH
STFLQQKAELEASEASTAHKFKGVLRRELAWLRQGPKARSTKQKARLQRIEEMRAEPLPQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHH
LRGSLKMANVSRRIGKLVIEAEALQVTANGKPDSPLLLDNFTYSFSPEDRVGIIGPNGSG
HHCCHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCEEEECCEEECCCCCCEEEECCCCCC
KSTLLDLIAGRRQPNGGTLRLGETVHLGYLDQHTEDITKGKGLDRKVIDFVEEAASQIIL
HHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEC
GEEQITASQLLERFLFPPAQQHSPLGKLSGGERRRLTLCRMLIQAPNVLLLDEPTNDLDI
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCH
QTLSVLEDFLEDFRGCVVVVSHDRYFLDRTVDRLFNFENGQLKRFEGNYSAFLEQQRRQE
HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
RDFNEANEPKSSLLLQDSGPSRISKRSSQEAESSSPQATETSKPRRRSFKESRELEALNI
CCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEC
DIPLLEAKRSNLEAALSGGDEDLTLLSQQLAELVETLHKAEERWLELSELAI
CCEEHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLISLIEASKDFGINTLFADLTLHINERERLGLIGPNGAGKSTLLKVLAGEEPLGEGER
CHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHCCCCCCCCHHH
RCSARLRVELVGQESAVNPGHTVLQEVLAGCGEKRELLLRFNELSNSMARNPNDATLLAE
HHHHHEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
LGQVSQRMDDAQAWSLEQQCQEVLQRLGITDLERPVEELSGGYRKRVGLASALVARPDVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEE
LLDEPTNHLDAAAVEWLQSWLDRFPGALVLVTHDRYVLDRVTRRMVEVDRGKAHNYAGNY
EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCH
STFLQQKAELEASEASTAHKFKGVLRRELAWLRQGPKARSTKQKARLQRIEEMRAEPLPQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHH
LRGSLKMANVSRRIGKLVIEAEALQVTANGKPDSPLLLDNFTYSFSPEDRVGIIGPNGSG
HHCCHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCEEEECCEEECCCCCCEEEECCCCCC
KSTLLDLIAGRRQPNGGTLRLGETVHLGYLDQHTEDITKGKGLDRKVIDFVEEAASQIIL
HHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEC
GEEQITASQLLERFLFPPAQQHSPLGKLSGGERRRLTLCRMLIQAPNVLLLDEPTNDLDI
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCH
QTLSVLEDFLEDFRGCVVVVSHDRYFLDRTVDRLFNFENGQLKRFEGNYSAFLEQQRRQE
HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
RDFNEANEPKSSLLLQDSGPSRISKRSSQEAESSSPQATETSKPRRRSFKESRELEALNI
CCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEC
DIPLLEAKRSNLEAALSGGDEDLTLLSQQLAELVETLHKAEERWLELSELAI
CCEEHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]