| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is arnT [H]
Identifier: 123968903
GI number: 123968903
Start: 1138511
End: 1140316
Strand: Reverse
Name: arnT [H]
Synonym: A9601_13701
Alternate gene names: 123968903
Gene position: 1140316-1138511 (Counterclockwise)
Preceding gene: 123968904
Following gene: 123968897
Centisome position: 68.29
GC content: 32.5
Gene sequence:
>1806_bases ATGATTCTTATTAACTCAAAAAAAAGGCTTATAACCTTATTGATAGTTTTAGTTTGTGGGATCATTATATTTTTCTTAGG TTTAGGCTCCACAGGATTGGTGGATGAAACCCCCCCCTTGTTTGCCGCTGCAGCACGGGCAATGAGTGAATCTGGTGATT GGTTAACTCCAAAAGTCAATGGAATATTCCGTTTTGATAAGCCTCCACTGATATATTGGCTAATGGGTTTTTTTTACTCA TTACCGAAAAACGAGATTTGGGATAATTTCGGGACTCTCTCTGCAAGACTACCTTCAGCTTTGGCATCATTATTTTTGAT GTTGATGATTGGAGATACGCTGTTTTGTTGGCCACAGAAGAGTGATAGGCAATTCCTCACTCCAATAGTTGCAACATTAG GCTTTGCTCTTTCTCCATTAATAATTATTTGGAGTAGAACTGCCGTGAGTGATGCTCTTTTAACTGGAACCTTAGGTATT AGCTTGCTATTGTTTTGGAGAAGAATGGCAAGTGAAAATAATGATCAATGCATTTCAGCCTGGGTATTTTTAGGGTTTGC AATTTTAACTAAAGGACCTGTTGCATTTGTTTTGGCATTATTTACTATTACGTGCTTCTTCTTTTGTCAGAAGAATTGGA AAACTTTGCTCAGTAAGATAAATCCAAAGAAAGGTTTTTTAATAACAATATTAATAAGTGTTCCATGGTACATATTAGAA CTTCTAAAAGAGGGAAAGCCTTTCTGGGATAATTTTTTTGGTTACCATAATTTTCAAAGATATACCTCAGTTGTAAATAA TCATGCAGAACCATTCTGGTTTTTTCTTTACATAATGATATTGGCTTCACTACCATTTACCCCTTTTTTGTGCCACGGGA TATTTAAAACCTTTAAGGATTTCTTAAAAAGTTCAAAAGAAAGTTGTAATGTATCTGACACACTTTATATATATTCTCTA TGTTGGTTATCGTCAGTTTTAATCTTCTTTAGCCTTTCTGCAACGAAACTTCCTAGCTATTGGTTGCCAGCAATTCCAGC GGCGGCATTATTAACAAGTAATAGCTTTGTAAGCTTAAAAAATATAAATAAAAGTTATTTATATTTTTGGATTTTTAATA TTTTAATTTTGTTTGGCTTCTCAATAGCATTCTTTTTCTCGGATGTTTGGCTGAGTTCAATTAATGATCCCGAAATGCCT AATCTTGCCTCAGAACTTGTAAGCTCTGGTATTATTTTCAAGGCAAAATTGTTCTTCTCTTCATTTACCCTTCTTGCAAT AATCTTATTTTCTTTAAAGTTCAAAAATATCCTCTTTTATCTTCAAATTCTACTTTTGATTGGACAATTTTTATTGATGT CGCCAATTAGAAAATTAGCAGATACTTCTAGGCAACTACCTTTGAGGAATATATCAAAATTAATTATAGATAATCGAAAG GGGAATGAAACTTTAGCAATGATAGGGGTAAGAAAACCGTCATTACATTATTATTCGAGACAAATAGTTTTTTATGAAGG AAGCACAGAAGAGGGATTGATTAATCTCTCAGAAAGGCTTAATACTGATAGGAGAAATAATTATGAAGATCAACCTGATT ATGAATACGAATCTATATTGGTTGTGATAGATGAATATTCTTCCCGACAAAAGCAATGGTCAAAAATTAATCATCAAAAA TTGGGCAAATATGGAATTTATAATTTATGGCGAATTCAAAAAAGTGATTTGAATAGGTATTCGGAATTTTTAATGATTAA CGGTTTTAAATCTGACTGGAAAAATAGAAAAGTTGAAAAATTTTAA
Upstream 100 bases:
>100_bases ATGTAGAGAATGGGTAGAAAAAAATGCCTCCGCAGATATATTTGCTAACAAGGTTGTGAAATGGCTTAATAAGGTAATGC ATGAATATAAATAATATTAA
Downstream 100 bases:
>100_bases CAAAGTCTTTTTTTTAGAAGAGCTTTTTTTAGATCATCAACGCTGCACTTACTTGGGATGTCAACTTTATTTAAATCTTC CATTAATTCAAGATCAATGA
Product: 4-amino-4-deoxy-L-arabinose transferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 601; Mature: 601
Protein sequence:
>601_residues MILINSKKRLITLLIVLVCGIIIFFLGLGSTGLVDETPPLFAAAARAMSESGDWLTPKVNGIFRFDKPPLIYWLMGFFYS LPKNEIWDNFGTLSARLPSALASLFLMLMIGDTLFCWPQKSDRQFLTPIVATLGFALSPLIIIWSRTAVSDALLTGTLGI SLLLFWRRMASENNDQCISAWVFLGFAILTKGPVAFVLALFTITCFFFCQKNWKTLLSKINPKKGFLITILISVPWYILE LLKEGKPFWDNFFGYHNFQRYTSVVNNHAEPFWFFLYIMILASLPFTPFLCHGIFKTFKDFLKSSKESCNVSDTLYIYSL CWLSSVLIFFSLSATKLPSYWLPAIPAAALLTSNSFVSLKNINKSYLYFWIFNILILFGFSIAFFFSDVWLSSINDPEMP NLASELVSSGIIFKAKLFFSSFTLLAIILFSLKFKNILFYLQILLLIGQFLLMSPIRKLADTSRQLPLRNISKLIIDNRK GNETLAMIGVRKPSLHYYSRQIVFYEGSTEEGLINLSERLNTDRRNNYEDQPDYEYESILVVIDEYSSRQKQWSKINHQK LGKYGIYNLWRIQKSDLNRYSEFLMINGFKSDWKNRKVEKF
Sequences:
>Translated_601_residues MILINSKKRLITLLIVLVCGIIIFFLGLGSTGLVDETPPLFAAAARAMSESGDWLTPKVNGIFRFDKPPLIYWLMGFFYS LPKNEIWDNFGTLSARLPSALASLFLMLMIGDTLFCWPQKSDRQFLTPIVATLGFALSPLIIIWSRTAVSDALLTGTLGI SLLLFWRRMASENNDQCISAWVFLGFAILTKGPVAFVLALFTITCFFFCQKNWKTLLSKINPKKGFLITILISVPWYILE LLKEGKPFWDNFFGYHNFQRYTSVVNNHAEPFWFFLYIMILASLPFTPFLCHGIFKTFKDFLKSSKESCNVSDTLYIYSL CWLSSVLIFFSLSATKLPSYWLPAIPAAALLTSNSFVSLKNINKSYLYFWIFNILILFGFSIAFFFSDVWLSSINDPEMP NLASELVSSGIIFKAKLFFSSFTLLAIILFSLKFKNILFYLQILLLIGQFLLMSPIRKLADTSRQLPLRNISKLIIDNRK GNETLAMIGVRKPSLHYYSRQIVFYEGSTEEGLINLSERLNTDRRNNYEDQPDYEYESILVVIDEYSSRQKQWSKINHQK LGKYGIYNLWRIQKSDLNRYSEFLMINGFKSDWKNRKVEKF >Mature_601_residues MILINSKKRLITLLIVLVCGIIIFFLGLGSTGLVDETPPLFAAAARAMSESGDWLTPKVNGIFRFDKPPLIYWLMGFFYS LPKNEIWDNFGTLSARLPSALASLFLMLMIGDTLFCWPQKSDRQFLTPIVATLGFALSPLIIIWSRTAVSDALLTGTLGI SLLLFWRRMASENNDQCISAWVFLGFAILTKGPVAFVLALFTITCFFFCQKNWKTLLSKINPKKGFLITILISVPWYILE LLKEGKPFWDNFFGYHNFQRYTSVVNNHAEPFWFFLYIMILASLPFTPFLCHGIFKTFKDFLKSSKESCNVSDTLYIYSL CWLSSVLIFFSLSATKLPSYWLPAIPAAALLTSNSFVSLKNINKSYLYFWIFNILILFGFSIAFFFSDVWLSSINDPEMP NLASELVSSGIIFKAKLFFSSFTLLAIILFSLKFKNILFYLQILLLIGQFLLMSPIRKLADTSRQLPLRNISKLIIDNRK GNETLAMIGVRKPSLHYYSRQIVFYEGSTEEGLINLSERLNTDRRNNYEDQPDYEYESILVVIDEYSSRQKQWSKINHQK LGKYGIYNLWRIQKSDLNRYSEFLMINGFKSDWKNRKVEKF
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=366, Percent_Identity=26.5027322404372, Blast_Score=89, Evalue=9e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 69313; Mature: 69313
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILINSKKRLITLLIVLVCGIIIFFLGLGSTGLVDETPPLFAAAARAMSESGDWLTPKVN CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCC GIFRFDKPPLIYWLMGFFYSLPKNEIWDNFGTLSARLPSALASLFLMLMIGDTLFCWPQK CEEECCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCC SDRQFLTPIVATLGFALSPLIIIWSRTAVSDALLTGTLGISLLLFWRRMASENNDQCISA CCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH WVFLGFAILTKGPVAFVLALFTITCFFFCQKNWKTLLSKINPKKGFLITILISVPWYILE HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH LLKEGKPFWDNFFGYHNFQRYTSVVNNHAEPFWFFLYIMILASLPFTPFLCHGIFKTFKD HHHCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FLKSSKESCNVSDTLYIYSLCWLSSVLIFFSLSATKLPSYWLPAIPAAALLTSNSFVSLK HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHCCCEEEEE NINKSYLYFWIFNILILFGFSIAFFFSDVWLSSINDPEMPNLASELVSSGIIFKAKLFFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEHHHHHH SFTLLAIILFSLKFKNILFYLQILLLIGQFLLMSPIRKLADTSRQLPLRNISKLIIDNRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC GNETLAMIGVRKPSLHYYSRQIVFYEGSTEEGLINLSERLNTDRRNNYEDQPDYEYESIL CCCEEEEEECCCCCHHHEEEEEEEEECCCCCCCEECHHHCCCCCCCCCCCCCCCCCCEEE VVIDEYSSRQKQWSKINHQKLGKYGIYNLWRIQKSDLNRYSEFLMINGFKSDWKNRKVEK EEEECHHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHHHEECCCHHHHCCCCCCC F C >Mature Secondary Structure MILINSKKRLITLLIVLVCGIIIFFLGLGSTGLVDETPPLFAAAARAMSESGDWLTPKVN CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCC GIFRFDKPPLIYWLMGFFYSLPKNEIWDNFGTLSARLPSALASLFLMLMIGDTLFCWPQK CEEECCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCC SDRQFLTPIVATLGFALSPLIIIWSRTAVSDALLTGTLGISLLLFWRRMASENNDQCISA CCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH WVFLGFAILTKGPVAFVLALFTITCFFFCQKNWKTLLSKINPKKGFLITILISVPWYILE HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH LLKEGKPFWDNFFGYHNFQRYTSVVNNHAEPFWFFLYIMILASLPFTPFLCHGIFKTFKD HHHCCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FLKSSKESCNVSDTLYIYSLCWLSSVLIFFSLSATKLPSYWLPAIPAAALLTSNSFVSLK HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHCCCEEEEE NINKSYLYFWIFNILILFGFSIAFFFSDVWLSSINDPEMPNLASELVSSGIIFKAKLFFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEHHHHHH SFTLLAIILFSLKFKNILFYLQILLLIGQFLLMSPIRKLADTSRQLPLRNISKLIIDNRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC GNETLAMIGVRKPSLHYYSRQIVFYEGSTEEGLINLSERLNTDRRNNYEDQPDYEYESIL CCCEEEEEECCCCCHHHEEEEEEEEECCCCCCCEECHHHCCCCCCCCCCCCCCCCCCEEE VVIDEYSSRQKQWSKINHQKLGKYGIYNLWRIQKSDLNRYSEFLMINGFKSDWKNRKVEK EEEECHHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHHHEECCCHHHHCCCCCCC F C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA