| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is nrdJ [H]
Identifier: 123968251
GI number: 123968251
Start: 634857
End: 637190
Strand: Reverse
Name: nrdJ [H]
Synonym: A9601_07161
Alternate gene names: 123968251
Gene position: 637190-634857 (Counterclockwise)
Preceding gene: 123968255
Following gene: 123968250
Centisome position: 38.16
GC content: 36.98
Gene sequence:
>2334_bases GTGACTGTTGCACCAAATAAAGCTTCTTCAGAGAGCAATTCCAATAATCTTAAAAAAGATGACTTTCCAAAGACTGCGCC AGCTGCTTACCCAGTTTTTTTCAGATCTTATAGTAGAAAAACTTCATCTGGCAAAAGGGAGAACTGGAGCGAAGTAGGCG AAAGGAATTTATCGGGATTAAAAGAATTAGGAAAACTTTCTGAAGAAGAATTAATCCTAATGAGAGAGATGCAAAGTAAC CAAAAAGCTCAACCTTCAGGAAGATGGTTATGGATAGGCGGAACCCCTTGGATTAATAAGAACCAAAATTTCTCAGGAGC ATACAACTGCACCTCAACAAACTTAATCGATTGGGAAGCCTTCGCATTAATGATGGACTTAGCAATGATGGGATGTGGAA CAGGTGCAATAATTGAGCCTCATTTTATAAATAATCTACCTACGGTAATTAACAAAATAAACATTAAATCAGTCAGTGAA GTTGGAATAACTCCTAAAGATCAAAGAGAAGAAAAGTCATCATTAGAAATTAAAGGAAAAGATCTTCATATCAAAGTTGG AGATAGCAGAAGAGGATGGGTAGATAGCTATAAATATCTTCTTGAGGCATCAAGTAACGAGAGTCTTGAAAGAGAAATTG ATGTTTATATTGATTTGGAAGATATTAGGCCTGCGGGAGAATCATTAAAAGGTTTTGGTGGTATGGCAAATCCTATCAAA TTGAAAGATCTTTACTCTAGAGTCGCATCACTTCTTGGAAAGGCAATTGGTAGGAAATTAAGTACAGTAGAGTGTTGTTT ATTAATTGATGAAGCTGCAGTAACCATAGTTGCTGGGAATATTAGAAGAAGTGCTGGAATGAGACAATTTGCTTCAAATG ATAGGGAAGCCGCATCTGCAAAAGAAAATTTATGGAGTCAAGATGAGAATGGTAATTGGAGAATAGATCCTGAAAAAGAT GCCCTCAGAATGGCCAATCATACTAGGGTTTACCATACAAAACCCACTTACCAAACTGTTTTGGATGCAGTAACAAAACA ATTCCATTCAGGTGAGGGAGCCATTCAATTTGCACCAGAAGCAATAGCAAGGTCAAATGCGGATATTCTCAAAGATGATG AATTGAGAAAGGAATTTATTGAAATCTACTCAGAACAAGGCAAGGATGAAGCGAGAAATTGGATAAATAGTAGTTATGGT CCTTTTTCAGAAGAAGAGTTAGACCACAGGATGAGTCGATATGGACTTAACCCTTGTGGGGAGATCTTGGGAAATGATTT CCATTGCAATTTGGCTGAAGTTCATTTAAATCAGATTGATCCAGAAAATTTTGAAGAGCAAAAAAAAGCTTTTAAAGCAG CCGCTCTTTCTGTAGCATGCTTACTTAATCATGAATTTGAAGTTGAGCGTTACAGAAAAAGTAGGGAATATGATCCTATC GTAGGAGTAAGTTTCACTGGATTATTTGATTTTTGTGTCCATGCTTTTGGGACGCCATGGTTGAAATGGTGGGAAGCAGG AAGGCCAAATAGCGAAGAAGGGAAGGCCTTCAAAGAAAAGGAAGCTAAATTCTTAGATTCTTGGAGAAAAATAGTAAAAG AAACTGTATGGGAATATTGTGATAAGCACAATCTAAGGAGACCAAATAGATGCACAACAGTTCAGCCAGCTGGAACTAAA AGTCTTCTTACTGGAGCAGCTCCAGGTTGGCATCCTCCAAAGGCTCAAAGATTCATAAGAAGAATAACTTTCAGGAAAAA TGACCCAATTGCTTTAGCTTGCATGGATTATGGTTACTCAGTTGTTCCATCTCAATCTGATAAAGATGAAAATGGTTGCT TGCTCGATAATCCATTTGATCCAAGATGTACAGAATGGTTAGTTGAAATCCCTACAGAAGTTAGTTGGGCAAATATAGAC GGCGCAGACCAAATAGACATCAATAATTTCTCAGCATTAGCTCAATTTGATTTTTACATGCAAGTGCAGAAATTTTACAC AGAGCATAATACCTCTGCAACCGTAGAATTTAGAGAAAATGAAATCGAGGATTTAGCTAAGGCTATTCATAATGCAATAG AAAATAATGAGGGATATATTTCAGCAGCATTGCTGGCTAGATTTAGTGCTAACGCTACTTTCCCGAGATTACCCTTTGAA CCAATAAGTAAGGAGGAATATATATCATTGCAGAATAAAGTAATAGAAAGGAAAGTAAATAACGATTTCTTTGACGCTCT TAATAAATATGATATTGGAGAACTATCTGAAGCAGGACCAGCAGGTTGTGATTCAGATAAGTGCTTGCTTCCTCTTGCTA AACCAAAAGATTAA
Upstream 100 bases:
>100_bases TAATTCTACACAAACCGTTAAATAGTGGTAAGAATAGTTGCAGACGCCACAGGTAGAGTTATTCTTCCAGTACGGGTTAT TTACATACGTTTTTTTTATC
Downstream 100 bases:
>100_bases ATTTTGAATAATTTGTAAATAAAAAATATAAATTAGTTTTTAAAAATTTAATTTATGGCTACCTCTTAAATAGGGACATA AATTATTTATGACATTAAGC
Product: ribonucleotide reductase (class II)
Products: NA
Alternate protein names: RTPR [H]
Number of amino acids: Translated: 777; Mature: 776
Protein sequence:
>777_residues MTVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTSSGKRENWSEVGERNLSGLKELGKLSEEELILMREMQSN QKAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEAFALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSE VGITPKDQREEKSSLEIKGKDLHIKVGDSRRGWVDSYKYLLEASSNESLEREIDVYIDLEDIRPAGESLKGFGGMANPIK LKDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASNDREAASAKENLWSQDENGNWRIDPEKD ALRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPEAIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYG PFSEEELDHRMSRYGLNPCGEILGNDFHCNLAEVHLNQIDPENFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPI VGVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYCDKHNLRRPNRCTTVQPAGTK SLLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYSVVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANID GADQIDINNFSALAQFDFYMQVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFE PISKEEYISLQNKVIERKVNNDFFDALNKYDIGELSEAGPAGCDSDKCLLPLAKPKD
Sequences:
>Translated_777_residues MTVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTSSGKRENWSEVGERNLSGLKELGKLSEEELILMREMQSN QKAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEAFALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSE VGITPKDQREEKSSLEIKGKDLHIKVGDSRRGWVDSYKYLLEASSNESLEREIDVYIDLEDIRPAGESLKGFGGMANPIK LKDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASNDREAASAKENLWSQDENGNWRIDPEKD ALRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPEAIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYG PFSEEELDHRMSRYGLNPCGEILGNDFHCNLAEVHLNQIDPENFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPI VGVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYCDKHNLRRPNRCTTVQPAGTK SLLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYSVVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANID GADQIDINNFSALAQFDFYMQVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFE PISKEEYISLQNKVIERKVNNDFFDALNKYDIGELSEAGPAGCDSDKCLLPLAKPKD >Mature_776_residues TVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTSSGKRENWSEVGERNLSGLKELGKLSEEELILMREMQSNQ KAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEAFALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSEV GITPKDQREEKSSLEIKGKDLHIKVGDSRRGWVDSYKYLLEASSNESLEREIDVYIDLEDIRPAGESLKGFGGMANPIKL KDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASNDREAASAKENLWSQDENGNWRIDPEKDA LRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPEAIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYGP FSEEELDHRMSRYGLNPCGEILGNDFHCNLAEVHLNQIDPENFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPIV GVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYCDKHNLRRPNRCTTVQPAGTKS LLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYSVVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANIDG ADQIDINNFSALAQFDFYMQVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFEP ISKEEYISLQNKVIERKVNNDFFDALNKYDIGELSEAGPAGCDSDKCLLPLAKPKD
Specific function: Unknown
COG id: COG1372
COG function: function code L; Intein/homing endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class II ribonucleoside-triphosphate reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000788 - InterPro: IPR013345 [H]
Pfam domain/function: PF02867 Ribonuc_red_lgC [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 87851; Mature: 87720
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTSSGKRENWSEVGERNLSGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH KELGKLSEEELILMREMQSNQKAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEA HHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH FALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSEVGITPKDQREEKSSLEIKGK HHHHHHHHHHCCCCCCEECCHHHCCHHHHHHHCCCCCHHHCCCCCCHHHHHHCCCEEECC DLHIKVGDSRRGWVDSYKYLLEASSNESLEREIDVYIDLEDIRPAGESLKGFGGMANPIK EEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCHHHHHCCCCCCCEE LKDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASNDREAASA HHHHHHHHHHHHHHHHCCHHCHHHHHEEECCCEEEEEECCHHHHHHHHHHHCCCHHHHHH KENLWSQDENGNWRIDPEKDALRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPE HHHHCCCCCCCCEEECCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECHH AIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYGPFSEEELDHRMSRYGLNPCG HHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHH EILGNDFHCNLAEVHLNQIDPENFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPI HHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCE VGVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYC ECEEHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH DKHNLRRPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYS HHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCE VVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANIDGADQIDINNFSALAQFDFYM ECCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCEEECCCCCCEECCCCHHHHHHHHHHH QVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFE HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCC PISKEEYISLQNKVIERKVNNDFFDALNKYDIGELSEAGPAGCDSDKCLLPLAKPKD CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCC >Mature Secondary Structure TVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTSSGKRENWSEVGERNLSGL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH KELGKLSEEELILMREMQSNQKAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEA HHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH FALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSEVGITPKDQREEKSSLEIKGK HHHHHHHHHHCCCCCCEECCHHHCCHHHHHHHCCCCCHHHCCCCCCHHHHHHCCCEEECC DLHIKVGDSRRGWVDSYKYLLEASSNESLEREIDVYIDLEDIRPAGESLKGFGGMANPIK EEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCHHHHHCCCCCCCEE LKDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASNDREAASA HHHHHHHHHHHHHHHHCCHHCHHHHHEEECCCEEEEEECCHHHHHHHHHHHCCCHHHHHH KENLWSQDENGNWRIDPEKDALRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPE HHHHCCCCCCCCEEECCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECHH AIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYGPFSEEELDHRMSRYGLNPCG HHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHH EILGNDFHCNLAEVHLNQIDPENFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPI HHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCE VGVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYC ECEEHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH DKHNLRRPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYS HHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCE VVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANIDGADQIDINNFSALAQFDFYM ECCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCEEECCCCCCEECCCCHHHHHHHHHHH QVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFE HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCC PISKEEYISLQNKVIERKVNNDFFDALNKYDIGELSEAGPAGCDSDKCLLPLAKPKD CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA