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The map label for this gene is lrtA [H]

Identifier: 123967988

GI number: 123967988

Start: 390933

End: 391517

Strand: Reverse

Name: lrtA [H]

Synonym: A9601_04511

Alternate gene names: 123967988

Gene position: 391517-390933 (Counterclockwise)

Preceding gene: 123967994

Following gene: 123967987

Centisome position: 23.45

GC content: 28.72

Gene sequence:

>585_bases
ATGAAAATTTTAATCCATGGAAAGAATCTTGAGCTCACTGGAGCATTAAAAGAATATACTGAGGCAAAGATAGAAAAAGC
AACACATCACTATAAGGATATCGTTAAAGAAGCTGACATACACCTTTCAATCGAAAAGAATCCAAGAGTCTCGTTCCAAA
CAGCAGAAGTTACTATTTTTGCGAATGGTACCGTAATTAGAGCTGAAGAAAAAACTGAGAATCTATACTCAAGCATTGAT
TTAGTTTCAAATAAACTTTGTAGAAAATTACGCAAATATAAAGAAAGAAACAATAAAACAATTCATAATAAACAATTTAA
AAATAAAGATTCTTTACCAATTGAAAGTATGGAATCAAATTTTTTAGATAAAGCTTTATTTAAAGAAGGAACTGAAGCAA
GTCTGCCTGAGCCATCTATAAAAAATAAATACTTTGAAATGACTCCAATTTCATCAGACGAAGCAAGAAAACAATTAGAT
CTAATTGATCATGATTTTTATGTTTTTCGAAACAAGAAAAATAATGAACTTCAAGTTATATATAAAAGGAATCATGGAGG
TTATGGACTGATTCAATCTAAATAA

Upstream 100 bases:

>100_bases
TCATTAAAAAAAGAAATATTATCAGGTTGTTTAATTATTGCTGTTCTATTATCCATATTTAAGTAGATTTAGAAAGTAAG
TAAATATTTTTAGATTTGTT

Downstream 100 bases:

>100_bases
GTTTTAAATGCCCAATATTGAATATGAATTAAACGAGAAAATTCATGCGATTATTATTAACCCTTATTTATCATGGGAAG
ATTTCTGTGTGAATTGCGAT

Product: light repressed protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSFQTAEVTIFANGTVIRAEEKTENLYSSID
LVSNKLCRKLRKYKERNNKTIHNKQFKNKDSLPIESMESNFLDKALFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLD
LIDHDFYVFRNKKNNELQVIYKRNHGGYGLIQSK

Sequences:

>Translated_194_residues
MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSFQTAEVTIFANGTVIRAEEKTENLYSSID
LVSNKLCRKLRKYKERNNKTIHNKQFKNKDSLPIESMESNFLDKALFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLD
LIDHDFYVFRNKKNNELQVIYKRNHGGYGLIQSK
>Mature_194_residues
MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSFQTAEVTIFANGTVIRAEEKTENLYSSID
LVSNKLCRKLRKYKERNNKTIHNKQFKNKDSLPIESMESNFLDKALFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLD
LIDHDFYVFRNKKNNELQVIYKRNHGGYGLIQSK

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 22548; Mature: 22548

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSFQTAEVTIF
CEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEE
ANGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNKQFKNKDSLPIESMESN
ECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
FLDKALFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFRNKKNNELQVI
HHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEE
YKRNHGGYGLIQSK
EEECCCCEEEEECC
>Mature Secondary Structure
MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIEKNPRVSFQTAEVTIF
CEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEE
ANGTVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNKQFKNKDSLPIESMESN
ECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
FLDKALFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFRNKKNNELQVI
HHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEE
YKRNHGGYGLIQSK
EEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8063707 [H]