Definition | Prochlorococcus marinus str. AS9601, complete genome. |
---|---|
Accession | NC_008816 |
Length | 1,669,886 |
Click here to switch to the map view.
The map label for this gene is 123967972
Identifier: 123967972
GI number: 123967972
Start: 376554
End: 377585
Strand: Reverse
Name: 123967972
Synonym: A9601_04351
Alternate gene names: NA
Gene position: 377585-376554 (Counterclockwise)
Preceding gene: 123967973
Following gene: 123967971
Centisome position: 22.61
GC content: 38.76
Gene sequence:
>1032_bases ATGCATTTTGTCCCCTGGAAAACAATAGATCTTGATGGAGCATTTCGAATAACAGCTCCAGACAGCATTTCTGAAGAGGT AATTCAGGAAGTAAGCAATGGAATTACTTTCAAGTTCAATGGCAAACTTGAAAAGACAAAACTTGAGATACTGCTAACTG CACCATTTGAATGGGAAGAAACTCTTCATCCCACAGAAAGGGAAAATCCTCCTGTTAAATTCATATGCCGTCTTATAAGC AGATCAACAGGTAGAAGAGAAATAATTGATTTAGAGGATGGTGGTGGTGGATTCTTTTTTTCAGAGACTTCCTATATACC TTTTTTAAATGGAGAAGAAGTCAGGGCAGAAGCACTTCTTGTAAGAACAGAACAATTTGCCGGAGAAAAATCAAGGAGCG GCTATGCCACAGAAATGGGTCAGATAATTGGAAGAAGTCTGATTCATACCATTCGTTTTGCTACCGCCGAAGCTAATAAT GACTCCATCTTCAACATAAAGTGGCAATCCTTTCCCCCTGAAAGCAAAGATCAGTTATGGAGATTAATCCCAAGTGAACC TCCAGTAATTGAAATGAATGCAGATGTGACTGCATCATTGAAAAAACTTCTGATGAGTAAGGCATTGAGGAAAGATATCA ATTCCCTTCAGAGAGATATCATCTTCACCTCAATTTGTTCCACTGTTTGGACCATGCTTATTTCTATTTCGATGAACTCC ATCCAGAATATGTTGAATACAAACAGTGACCTGAGCAGTGAAGAAATTGTTGAGCAATTGCCGCCATCACAACTTCAGAC TCTATCTCTATTTTCCAAGAATCTTCTTGAAACAAATATTTCTTCACATGAGGCGGTTGTCGCTCTTGCTAATGAACTTA GATCACCCGAATCTTTTCAGAAGTTCATTATAAAAATGAGTTCAATAATCCAGCAGGAAACAAAGATTCTGGAATTGGCC GAAATAATGGCAAGAGGGTGCAGTTTTGAATCAGATATTCCCGCAGACCTAGAAAAAGAGGAGGTTGCATGA
Upstream 100 bases:
>100_bases CTGCCGAAAACCAATTTTCATCAGTTCCTTTTGAGTGCATAGTCAAACCTCCATCCGGAGTAAACCCTGAAATTGCAGGC TTCAGGAAGGTAGGTTAATC
Downstream 100 bases:
>100_bases GCGAAAAACTCTTCAGATTGAAATCACCTCTAATAAGTAATGGACTTATCTCTGCTTTAAGAAATCCAGATTCTGTAAGT GTAGAGGCAGTCAACTGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MHFVPWKTIDLDGAFRITAPDSISEEVIQEVSNGITFKFNGKLEKTKLEILLTAPFEWEETLHPTERENPPVKFICRLIS RSTGRREIIDLEDGGGGFFFSETSYIPFLNGEEVRAEALLVRTEQFAGEKSRSGYATEMGQIIGRSLIHTIRFATAEANN DSIFNIKWQSFPPESKDQLWRLIPSEPPVIEMNADVTASLKKLLMSKALRKDINSLQRDIIFTSICSTVWTMLISISMNS IQNMLNTNSDLSSEEIVEQLPPSQLQTLSLFSKNLLETNISSHEAVVALANELRSPESFQKFIIKMSSIIQQETKILELA EIMARGCSFESDIPADLEKEEVA
Sequences:
>Translated_343_residues MHFVPWKTIDLDGAFRITAPDSISEEVIQEVSNGITFKFNGKLEKTKLEILLTAPFEWEETLHPTERENPPVKFICRLIS RSTGRREIIDLEDGGGGFFFSETSYIPFLNGEEVRAEALLVRTEQFAGEKSRSGYATEMGQIIGRSLIHTIRFATAEANN DSIFNIKWQSFPPESKDQLWRLIPSEPPVIEMNADVTASLKKLLMSKALRKDINSLQRDIIFTSICSTVWTMLISISMNS IQNMLNTNSDLSSEEIVEQLPPSQLQTLSLFSKNLLETNISSHEAVVALANELRSPESFQKFIIKMSSIIQQETKILELA EIMARGCSFESDIPADLEKEEVA >Mature_343_residues MHFVPWKTIDLDGAFRITAPDSISEEVIQEVSNGITFKFNGKLEKTKLEILLTAPFEWEETLHPTERENPPVKFICRLIS RSTGRREIIDLEDGGGGFFFSETSYIPFLNGEEVRAEALLVRTEQFAGEKSRSGYATEMGQIIGRSLIHTIRFATAEANN DSIFNIKWQSFPPESKDQLWRLIPSEPPVIEMNADVTASLKKLLMSKALRKDINSLQRDIIFTSICSTVWTMLISISMNS IQNMLNTNSDLSSEEIVEQLPPSQLQTLSLFSKNLLETNISSHEAVVALANELRSPESFQKFIIKMSSIIQQETKILELA EIMARGCSFESDIPADLEKEEVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38698; Mature: 38698
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFVPWKTIDLDGAFRITAPDSISEEVIQEVSNGITFKFNGKLEKTKLEILLTAPFEWEE CCCCCCEEEECCCEEEEECCCCHHHHHHHHHHCCEEEEECCCEEEEEEEEEEECCCCHHH TLHPTERENPPVKFICRLISRSTGRREIIDLEDGGGGFFFSETSYIPFLNGEEVRAEALL CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHH VRTEQFAGEKSRSGYATEMGQIIGRSLIHTIRFATAEANNDSIFNIKWQSFPPESKDQLW HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH RLIPSEPPVIEMNADVTASLKKLLMSKALRKDINSLQRDIIFTSICSTVWTMLISISMNS HHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQNMLNTNSDLSSEEIVEQLPPSQLQTLSLFSKNLLETNISSHEAVVALANELRSPESFQ HHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH KFIIKMSSIIQQETKILELAEIMARGCSFESDIPADLEKEEVA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC >Mature Secondary Structure MHFVPWKTIDLDGAFRITAPDSISEEVIQEVSNGITFKFNGKLEKTKLEILLTAPFEWEE CCCCCCEEEECCCEEEEECCCCHHHHHHHHHHCCEEEEECCCEEEEEEEEEEECCCCHHH TLHPTERENPPVKFICRLISRSTGRREIIDLEDGGGGFFFSETSYIPFLNGEEVRAEALL CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHH VRTEQFAGEKSRSGYATEMGQIIGRSLIHTIRFATAEANNDSIFNIKWQSFPPESKDQLW HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH RLIPSEPPVIEMNADVTASLKKLLMSKALRKDINSLQRDIIFTSICSTVWTMLISISMNS HHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQNMLNTNSDLSSEEIVEQLPPSQLQTLSLFSKNLLETNISSHEAVVALANELRSPESFQ HHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH KFIIKMSSIIQQETKILELAEIMARGCSFESDIPADLEKEEVA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA