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The map label for this gene is rfbD [H]

Identifier: 121639700

GI number: 121639700

Start: 4201661

End: 4202503

Strand: Direct

Name: rfbD [H]

Synonym: BCG_3845

Alternate gene names: 121639700

Gene position: 4201661-4202503 (Clockwise)

Preceding gene: 121639699

Following gene: 121639701

Centisome position: 96.05

GC content: 62.63

Gene sequence:

>843_bases
ATGACATTCATGGATGCTCAAGCTAGCTTCCAGACACAGTCGCGGACACTGGCCCGCGTCCGAGGCGATCTGGTCGACGG
GTTCCGCCGCCACGAGCTGTGGCTGCACCTGGGCTGGCAGGACATCAAGCAGCGGTACCGCCGCTCGGTGCTGGGGCCGT
TCTGGATCACCATCGCCACCGGAACGACCGCCGTCGCGATGGGCGGCCTGTACTCCAAGCTGTTTCGGCTCGAGCTGTCT
GAGCACCTGCCCTACGTCACGCTCGGGCTGATCGTCTGGAACCTGATCAACGCCGCCATCCTGGACGGCGCAGAGGTTTT
CGTCGCCAACGAAGGTCTGATCAAACAGCTGCCGGCACCGTTGAGCGTGCACGTCTATCGGTTGGTGTGGCGGCAGATGA
TCTTCTTCGCCCACAACATCGTCATCTACTTCGTCATCGCGATCATCTTTCCTAAGCCGTGGTCGTGGGCGGATCTGTCG
TTTCTTCCGGCGCTGGCGCTCATTTTCCTCAATTGCGTTTGGGTGTCACTGTGTTTCGGCATCCTGGCGACCCGCTACCG
CGACATCGGCCCGCTGCTGTTTTCCGTTGTGCAGTTGTTGTTCTTCATGACGCCGATCATCTGGAACGACGAGACCCTGC
GTCGGCAGGGCGCGGGCCGCTGGTCGAGCATCGTCGAGCTCAACCCGCTGCTGCACTATCTGGACATCGTGCGGGCGCCA
CTGTTGGGCGCTCACCAGGAGCTGCGGCACTGGCTGGTGGTGCTGGTGTTGACCGTCGTCGGCTGGATGCTGGCGGCGTT
CGCGATGCGGCAGTATCGCGCGCGGGTGCCCTACTGGGTGTAG

Upstream 100 bases:

>100_bases
TCTTCCTGGTGACCCGCCGCGACCCTAAAGGCCTGTGGGAGTGGATTCGGTTGCGCCGCCTGGGCCGTCGGGAGAAGTTT
GGCAAGCCTGGAGGATCTGC

Downstream 100 bases:

>100_bases
GGACTATTCCGGCGGCTATAGCCGACCGGCTTCTTTCACGCGGCTTGCGCGTGACGGGCCGCCGTTGATCTCAAGATCGG
CTGGCAACGGCCGCGTACCA

Product: putative O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter rfbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLYSKLFRLELS
EHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLS
FLPALALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP
LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV

Sequences:

>Translated_280_residues
MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLYSKLFRLELS
EHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLS
FLPALALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP
LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV
>Mature_279_residues
TFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTAVAMGGLYSKLFRLELSE
HLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAPLSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSF
LPALALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAPL
LGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 32337; Mature: 32206

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCCEEEEEC
GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCC
LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP
HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TFMDAQASFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIAT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCCEEEEEC
GTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFVANEGLIKQLPAP
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCC
LSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWADLSFLPALALIFLNCVWVSLCFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ILATRYRDIGPLLFSVVQLLFFMTPIIWNDETLRRQGAGRWSSIVELNPLLHYLDIVRAP
HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LLGAHQELRHWLVVLVLTVVGWMLAAFAMRQYRARVPYWV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]