Definition | Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome. |
---|---|
Accession | NC_008769 |
Length | 4,374,522 |
Click here to switch to the map view.
The map label for this gene is 121638001
Identifier: 121638001
GI number: 121638001
Start: 2358423
End: 2359259
Strand: Direct
Name: 121638001
Synonym: BCG_2136
Alternate gene names: NA
Gene position: 2358423-2359259 (Clockwise)
Preceding gene: 121637999
Following gene: 121638005
Centisome position: 53.91
GC content: 66.91
Gene sequence:
>837_bases ATGGCCGACCAGCCGGACCCGCCCACACCACGGCCGGCGTTATCACCGTCACGGGCGACGGACTTCAAGCAATGCCCGCT GCTATACCGGTTTCGCGCGATCGACCGGCTACCCGAGGCGACGTCGGCGGCGCAGTTACGGGGTTCGGTGGTGCACGCCG CGCTTGAGCAGCTCTATGGGCTACCCGCGGGGCTGCGCAGCCCGGATACTGCGAGGTCACTGGTGCAGCGCGCTTGGGAC CAGATGGTCGCCGCGGAGCCCGAACTGGCCGGCGAACTGGACCCCGGACAACCAACCCAGCTGCTGGAGGACGCCCGCGC GTTGGTGTCCGGCTACTACCGGCTGGAAGACCCGACTCGGTTCGACCCGCAATGCTGCGAACAGCGGGTGGAGGTCGAAC TGGCCGACGGAACTCTGTTGCGCGGCTACATCGACCGCATTGACGTCGCCGCCACCGGCGAGCTGCGGGTGGTCGACTAC AAGACTGGCAAGGCGCCGCCGGCGGCGCGGGCGTTGGCGGAGTTTAAGGCGATGTTTCAGATGAAGTTCTACGCGGTGGC GCTATTTCGGTCGCGCGGCGTGCCGCCCACCCGGCTGCGGCTCATCTATCTGGCCGACGGCCAGCTGCTCGACTATTCAC CGGACCGCGACGAGCTATTGCGTTTCGAAAAGACGTTGATGGCGATTTGGCGTGCTATCCAATCCGCAGGCGAGACAGGC GATTTCCGCCCCAACCCATCGCGGCTCTGCGATTGGTGCCCGCATCAACAGCGCTGCCCGGCCTTCGGCGGAACACCACC GCCCTATCCAGGGTGGCCCACCGAGCCGGCGGCATAA
Upstream 100 bases:
>100_bases GATGCTGAATGGGCCGGTTGCTGACACGCCGTCTAGCGTGCCAGCCGACTCGCCGCGATCGGTGCTCGGGGTTGTCGGCG CCCAACCCTAAGCTGCGGAC
Downstream 100 bases:
>100_bases ACGATCGCGTCGAAGTGCGGTGTCATAGGGCCGCCGCGGCGGCGACGATGGCAAACCCGCCCAACACCGCGACCGAATCC TCGAGCAGCGCGATCGGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: RecB Family Exonuclease-Like Protein; UvrD/REP Helicase; Superfamily I Helicase; RecB Family Protein Exonuclease; Recb Family Exonuclease
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTARSLVQRAWD QMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDY KTGKAPPAARALAEFKAMFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA
Sequences:
>Translated_278_residues MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTARSLVQRAWD QMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDY KTGKAPPAARALAEFKAMFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA >Mature_277_residues ADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTARSLVQRAWDQ MVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYK TGKAPPAARALAEFKAMFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGD FRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA
Specific function: Unknown
COG id: COG2887
COG function: function code L; RecB family exonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30926; Mature: 30795
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG CCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR CCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQ CCHHHHHHHHEEEECCCHHHHHHHHHHCEEECCCEEEEEECCCCCCHHHHHHHHHHHHHH MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG HHHHHHHHHHHCCCCHHHEEEEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG CCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR CCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQ CCHHHHHHHHEEEECCCHHHHHHHHHHCEEECCCEEEEEECCCCCCHHHHHHHHHHHHHH MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG HHHHHHHHHHHCCCCHHHEEEEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA