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The map label for this gene is yhiX [C]

Identifier: 121637325

GI number: 121637325

Start: 1596207

End: 1597241

Strand: Direct

Name: yhiX [C]

Synonym: BCG_1456

Alternate gene names: 121637325

Gene position: 1596207-1597241 (Clockwise)

Preceding gene: 121637322

Following gene: 121637331

Centisome position: 36.49

GC content: 63.57

Gene sequence:

>1035_bases
GTGGGACATCTACCGCCTCCGGCCGAGGTGAGGCATCCGGTGTATGCGACCCGGGTGCTGTGTGAGGTGGCCAACGAGCG
CGGGGTGCCGACCGCTGATGTGCTGGCGGGCACGGCGATCGAGCCGGCCGACCTCGACGATCCGGACGCGGTGGTCGGTG
CGCTTGACGAGATCACCGCGGTGCGCCGGTTGCTGGCCCGATTGCCCGACGACGCCGGTATCGGGATCGACGTAGGCAGC
CGGTTCGCGCTCACCCACTTCGGGTTGTTCGGGTTTGCCGTGATGTCATGTGGCACCCTTCGCGAACTGCTTACCATCGC
GATGCGCTATTTCGCGTTGACCACCATGCACGTCGACATCACGTTGTTTGAAACCGCCGACGATTGCCTGGTCGAACTGG
ATGCCAGCCACTTGCCGGCCGATGTCCGTGGATTCTTCATCGAGCGCGATATTGCCGGAATCATCGCGACGACAACGAGT
TTCGCGCTTCCGTTAGCCGCGAAGTATGCGGATCAAGTATCGGCCGAACTGGCGGTTGACGCGGAATTGTTGCGCCCGTT
GCTCGAGCTTGTGCCGGTGCACGACGTCGCATTCGGGCGCGCGCACAACCGGGTGCACTTCCCGCGTGCCATGTTCGACG
AGCCGTTGCCGCAGGCCGACCGCCATACGTTGGAAATGTGTATTGCACAATGCGACGTGCTGATGCAACGCAACGAGCGA
CGCCGTGGCATCACGGCCTTGGTGCGCAGCAAGCTGTTTCGCGATTCCGGGCTTTTCCCAACGTTTACCGACGTTGCTGG
CGAACTTGACATGCATCCGCGGACGCTGCGGCGTCGACTTGCCGAGGAAGGCACTTCGTTTCGGGCCTTGCTGGGCGAGG
CGCGCTCCACCGTGGCCGTCGACCTGCTACGCAACGTCGGGCTGACGGTGCAGCAGGTGTCCACCCGGCTGGGCTACACC
GAAGTCTCGACGTTCTCGCATGCGTTCAAACGCTGGTATGGCGTTGCGCCCAGCGAATATTCGCGCCGCGGGTAG

Upstream 100 bases:

>100_bases
CGCTGGGTGGTGGCGGTGGCCATGACTTCACTGTATGGATGACGCTGACTGGCCCGAAATGAGACTATGGGACAAAGTGT
TGTGAGTTTAGGACAGCCTC

Downstream 100 bases:

>100_bases
ACCAGCCCTTTTCAGGGTTTCGCGGCCCGCGTCGGTTTGGTCGGGTTAGGCGGGGCCGGGCTGGCCGGGCGGACCGGGTT
GGCCGGGCTGGCCGAACAGG

Product: putative transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGS
RFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTS
FALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER
RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYT
EVSTFSHAFKRWYGVAPSEYSRRG

Sequences:

>Translated_344_residues
MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGS
RFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTS
FALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER
RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYT
EVSTFSHAFKRWYGVAPSEYSRRG
>Mature_343_residues
GHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDVGSR
FALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSF
ALPLAAKYADQVSAELAVDAELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERR
RGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYTE
VSTFSHAFKRWYGVAPSEYSRRG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1789933, Length=253, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1395_MYCTU (P68913)

Other databases:

- EMBL:   BX842576
- EMBL:   AE000516
- RefSeq:   NP_335891.1
- RefSeq:   YP_177808.1
- ProteinModelPortal:   P68913
- EnsemblBacteria:   EBMYCT00000002762
- EnsemblBacteria:   EBMYCT00000072347
- GeneID:   886251
- GeneID:   924533
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT1440
- KEGG:   mtu:Rv1395
- TIGR:   MT1440
- TubercuList:   Rv1395
- GeneTree:   EBGT00050000016677
- HOGENOM:   HBG687832
- OMA:   RRWKGMT
- ProtClustDB:   CLSK799800
- GO:   GO:0005622
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- Gene3D:   G3DSA:1.10.10.60
- PRINTS:   PR00032
- SMART:   SM00342

Pfam domain/function: PF00165 HTH_AraC; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 37895; Mature: 37764

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA
CCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD
EEEECCCHHHEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER
HHHHHHHHHHHCHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV
HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG
HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHCCCC
>Mature Secondary Structure 
GHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITA
CCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
VRRLLARLPDDAGIGIDVGSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDI
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
TLFETADDCLVELDASHLPADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVD
EEEECCCHHHEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELLRPLLELVPVHDVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNER
HHHHHHHHHHHCHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRGITALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAV
HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG
HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430