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The map label for this gene is rpoZ

Identifier: 121637320

GI number: 121637320

Start: 1590253

End: 1590585

Strand: Direct

Name: rpoZ

Synonym: BCG_1451

Alternate gene names: 121637320

Gene position: 1590253-1590585 (Clockwise)

Preceding gene: 121637319

Following gene: 121637321

Centisome position: 36.35

GC content: 62.16

Gene sequence:

>333_bases
GTGAGTATCTCGCAGTCCGACGCGTCGTTGGCCGCCGTCCCCGCCGTGGATCAGTTCGATCCGTCGTCAGGTGCATCAGG
TGGCTACGACACCCCGCTGGGCATCACCAATCCGCCCATCGACGAGTTGCTGGACCGCGTCTCGAGCAAATACGCCCTCG
TGATCTATGCGGCAAAGCGTGCCCGGCAGATCAACGACTACTACAACCAGCTTGGCGAGGGCATCCTCGAATATGTCGGT
CCGCTGGTTGAGCCGGGGTTGCAAGAGAAGCCGTTGTCCATCGCGTTGCGCGAGATCCACGCCGATCTGCTCGAGCACAC
CGAGGGCGAGTAG

Upstream 100 bases:

>100_bases
CCTTGCTGGTGGGAACGGCACCGGGCTCCCCGTGACCCACGTCGTGACTAGTCAGTATTTAGCTTTCCAAGCCGCTCTAC
GCCGCCAGGAGAAATTTCAC

Downstream 100 bases:

>100_bases
CAGGGCAGGCCTGAGGTGGTGGACCATAAACGGATCCCCAAGCAGGTAATAGTCGGTGTCTCCGGGGGCATCGCCGCCTA
CAAGGCGTGCACGGTTGTTC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVG
PLVEPGLQEKPLSIALREIHADLLEHTEGE

Sequences:

>Translated_110_residues
MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVG
PLVEPGLQEKPLSIALREIHADLLEHTEGE
>Mature_109_residues
SISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGP
LVEPGLQEKPLSIALREIHADLLEHTEGE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_MYCBO (P66722)

Other databases:

- EMBL:   BX248338
- RefSeq:   NP_855077.1
- ProteinModelPortal:   P66722
- EnsemblBacteria:   EBMYCT00000015152
- GeneID:   1092003
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb1425
- GeneTree:   EBGT00050000017753
- HOGENOM:   HBG742204
- OMA:   VIFAAKR
- ProtClustDB:   PRK00392
- BioCyc:   MBOV233413:MB1425-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 11842; Mature: 11711

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEHEEHHHHH
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR
CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEHEEHHHHH
ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972