Definition | Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome. |
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Accession | NC_008769 |
Length | 4,374,522 |
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The map label for this gene is 121637061
Identifier: 121637061
GI number: 121637061
Start: 1284489
End: 1285949
Strand: Reverse
Name: 121637061
Synonym: BCG_1190c
Alternate gene names: NA
Gene position: 1285949-1284489 (Counterclockwise)
Preceding gene: 121637065
Following gene: 121637060
Centisome position: 29.4
GC content: 65.37
Gene sequence:
>1461_bases ATGACGCGGAGTAATGTCTTACCGGTGGCTAGGACGTATTCGAGGACGTTTTCCGGTGCCCGCCTGCGGCGGTTACGTCA AGAGCGCGGGCTCACCCAGGTGGCGCTGGCCAAGGCCCTGGACTTATCCACAAGCTATGTCAACCAGTTGGAGAATGACC AGCGGCCCATCACCGTGCCCGTGCTGCTTCTGCTTACCGAGCGGTTTGACCTGTCGGCGCAGTATTTCTCCTCGGATTCC GACGCACGGTTGGTGGCCGACCTGTCCGACGTCTTCACCGACATCGGCGTCGAGCACGCGGTCAGCGGCGCCCAGATCGA AGAATTCGTCGCCCGGATGCCCGAGGTCGGCCACAGCCTGGTTGCCGTGCACCGCCGGTTGCGCGCCGCCACCGAGGAAC TAGAGGGCTACCGATCTCGTGCGACCGCCGAAACCGAGCTACCGCCCGCGCGGCCGATGCCGTTCGAGGAGGTCCGCGAC TTCTTCTACGACCGCAACAACTACATCCACGACCTGGACATGGCGGCGGAGCGGATGTTTACCGAAAGCGGGATGCGGAC CGGCGGATTGGACATCCAGCTGGCCGAGCTGATGCGGGACCGGTTCGGCATCTCGGTGGTGATCGATGACAATCTGCCCG ACACCGCCAAGCGCCGCTACCACCCCGACACCAAGGTCCTTCGGGTCGCCCACTGGCTGATGCCCGGACAGCGCGCCTTC CAGATCGCCACCCAACTGGCGCTGGTGGGCCAGTCAGACCTGATCTCGTCGATCGTGGCCACCGATGACCAGCTCAGCAC CGAAGCCCGCGGCGTCGCGCGCATCGGACTGGCCAACTACTTCGCCGGCGCCTTCCTGCTCCCCTACCGCGAATTCCACC GTGCCGCAGAGCAGTTACGCTATGACATCGACCTGCTGGGCCGCCGGTTCGGAGTGGGCTTCGAAACCGTCTGCCACCGG CTCTCCACACTGCAGCGCCCGCGGCAGCGAGGGATACCGTTCATCTTCGTCCGCACCGACAAGGCCGGAAACATCTCAAA GCGACAGTCCGCGACGGCGTTTCACTTCAGCCGGGTCGGCGGCAGCTGCCCGCTGTGGGTGGTCCACGACGCGTTCGCCC AGCCAGAGAGGATCGTCCGCCAGGTGGCGCAAATGCCCGACGGCAGGTCGTACTTCTGGGTGGCCAAGACCACCGCTGCC GACGGGCTCGGGTATCTGGGCCCGCACAAGAACTTCGCGGTCGGGCTGGGCTGCGACCTCGCGCACGCCCATAAACTCGT CTACTCCACCGGTGTCGTCCTGGACGACCCGAGCACGGAGGTCCCGATCGGGGCGGGCTGCAAGATCTGCAACCGAACGT CGTGCGCCCAACGTGCGTTCCCCTATCTCGGTGGTCGCGTCGCGGTCGACGAGAACGCGGGCAGCAGCTTGCCTTATTCG TCGACCGAGCAATCGGTTTGA
Upstream 100 bases:
>100_bases AACATAATCCGCACCATACGCAGCACAGGACACCAACAAAAGACCCTGAAAAGGCGTACTTTTGTGTCCTGACCCGGCAC ATTTTGCAAATTTTGCGAAC
Downstream 100 bases:
>100_bases CCGCCCGACGCCACAGCAGACAACGAAACCCCTTATATTACTGTGGTTTCAGCAGGCTCTGGGCAAGCATTGTTGTCGGT GCCTGCACATAGCATTCAGT
Product: putative transcriptional regulator protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSSDS DARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRD FFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHR LSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAA DGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS STEQSV
Sequences:
>Translated_486_residues MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSSDS DARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRD FFYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHR LSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAA DGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS STEQSV >Mature_485_residues TRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSSDSD ARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSLVAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDF FYDRNNYIHDLDMAAERMFTESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAFQ IATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLRYDIDLLGRRFGVGFETVCHRL STLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAAD GLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYSS TEQSV
Specific function: Unknown
COG id: COG3800
COG function: function code R; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018653 - InterPro: IPR010359 - InterPro: IPR001387 - InterPro: IPR010982 [H]
Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]
EC number: NA
Molecular weight: Translated: 54088; Mature: 53957
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP CCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL HHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHH TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF HHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCCHHHH QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL CCCCEEEEEHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCH AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS HHHHHHHHHCCEEECCCCCCCCCCCCCCHHCCCHHHHHHHHHCCCEEEEECCCCCCCCCC STEQSV CCCCCC >Mature Secondary Structure TRSNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVP CCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH VLLLLTERFDLSAQYFSSDSDARLVADLSDVFTDIGVEHAVSGAQIEEFVARMPEVGHSL HHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VAVHRRLRAATEELEGYRSRATAETELPPARPMPFEEVRDFFYDRNNYIHDLDMAAERMF HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHH TESGMRTGGLDIQLAELMRDRFGISVVIDDNLPDTAKRRYHPDTKVLRVAHWLMPGQRAF HHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHCCCHHHH QIATQLALVGQSDLISSIVATDDQLSTEARGVARIGLANYFAGAFLLPYREFHRAAEQLR HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YDIDLLGRRFGVGFETVCHRLSTLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC GSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDL CCCCEEEEEHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCH AHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPYS HHHHHHHHHCCEEECCCCCCCCCCCCCCHHCCCHHHHHHHHHCCCEEEEECCCCCCCCCC STEQSV CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]