| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is dppD [C]
Identifier: 121610357
GI number: 121610357
Start: 3796693
End: 3797703
Strand: Direct
Name: dppD [C]
Synonym: Veis_3425
Alternate gene names: 121610357
Gene position: 3796693-3797703 (Clockwise)
Preceding gene: 121610356
Following gene: 121610358
Centisome position: 68.2
GC content: 70.52
Gene sequence:
>1011_bases ATGGCGCTGAACCAGCCTTTGCTGTCGTTGCGCGACGTGACGGTTGCGTTCCACACCGCGCACGGTGAACTGCCGGTGAC GCGCAAGGTCGCGTTCGACATCGCCCGTGGCGAGCGCGTCGGCCTGGTCGGCGAAAGCGGCTGCGGCAAGACCGTGACCG GCCTGGCGGTCATGCGTTTGCTGCCGCCGCAGGTGGCGCGTATCGCTGGCCGCATCGACTTCGGGGGCCGGGATCTGGCG CAACTGCCCGAGCGCGAGATGCGCGCAGTGCGCGGCCGCGACATCGCGATGATTTTCCAGGAGCCGATGAGCGCACTCGA TCCGGTGTTCACCGTCGGCACCCAGATCAGCGAAGCCTGGCTCGCGCACCACCCCGGGCACCCGGCGCAGGCCAGGCTGC GCGCGATCGAGGCGCTGGCGCAGGTCGGCATTGCGCAGCCGGCGCGCCGCTACGGCGAATACCCGCACCATCTGTCGGGC GGCATGCGCCAGCGCGTGATGATTGCCATGGCCATCATCTGTGCGCCCCGGCTGTTGATCGCCGACGAACCCACCACCGC GCTCGACGTGACGGTGCAGGCGCAGATCATCACCTTGCTGCGCGACCTGAGCGAGCGCACCGGCATGGCGCTGCTCTTCA TCACGCACGACCTGGGCGTGGTGGCCGAGACCTGCACCCGGATGTTGACGATGTACGCCGGCGAAGTGGTCGAAGATGCC GCAACCGACGCGGCGCTGATGCGCCCGCGCCACCCTTACACATCCGGCTTGCTGCGCTCGCTGCCCCGGCTGACGCCATG GCGCGCCAGACTCGGCTCCATTCCCGGGCGTGTGCCGGCGCCGGGCGCCATGCCTGCCGGCTGCCGTTACCGCGCACGCT GCACCTTCGCCGCGCCGGCCTGCAGCGCCGAGCAGGGCCTGCTGCAAATCGGCGGCGCACCCGTCGCACCGCACTGGGCG CGCTGCGTGCGCGCGCAAGAGCTCGAACTCGCAGGCGCCGTCAGTCCATGA
Upstream 100 bases:
>100_bases GACATGCGTTGGCGGCACGCAGCGCAAGCCCGGAGAAAGCCGGGCGCCAACGGGCCGCGAACCCGCGCGCGTGCAGCACC GGCCCTTGGCGACTGGCCCC
Downstream 100 bases:
>100_bases GTGCCGCCCGGCCGCCCGAAGGCACTCATACCGTAGCCGAAGGCGAAGGTACCCCAGTGGGCGCCCCGCCCGTCATCGAA GTGCGCCAACTGCGCGTGCT
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MALNQPLLSLRDVTVAFHTAHGELPVTRKVAFDIARGERVGLVGESGCGKTVTGLAVMRLLPPQVARIAGRIDFGGRDLA QLPEREMRAVRGRDIAMIFQEPMSALDPVFTVGTQISEAWLAHHPGHPAQARLRAIEALAQVGIAQPARRYGEYPHHLSG GMRQRVMIAMAIICAPRLLIADEPTTALDVTVQAQIITLLRDLSERTGMALLFITHDLGVVAETCTRMLTMYAGEVVEDA ATDAALMRPRHPYTSGLLRSLPRLTPWRARLGSIPGRVPAPGAMPAGCRYRARCTFAAPACSAEQGLLQIGGAPVAPHWA RCVRAQELELAGAVSP
Sequences:
>Translated_336_residues MALNQPLLSLRDVTVAFHTAHGELPVTRKVAFDIARGERVGLVGESGCGKTVTGLAVMRLLPPQVARIAGRIDFGGRDLA QLPEREMRAVRGRDIAMIFQEPMSALDPVFTVGTQISEAWLAHHPGHPAQARLRAIEALAQVGIAQPARRYGEYPHHLSG GMRQRVMIAMAIICAPRLLIADEPTTALDVTVQAQIITLLRDLSERTGMALLFITHDLGVVAETCTRMLTMYAGEVVEDA ATDAALMRPRHPYTSGLLRSLPRLTPWRARLGSIPGRVPAPGAMPAGCRYRARCTFAAPACSAEQGLLQIGGAPVAPHWA RCVRAQELELAGAVSP >Mature_335_residues ALNQPLLSLRDVTVAFHTAHGELPVTRKVAFDIARGERVGLVGESGCGKTVTGLAVMRLLPPQVARIAGRIDFGGRDLAQ LPEREMRAVRGRDIAMIFQEPMSALDPVFTVGTQISEAWLAHHPGHPAQARLRAIEALAQVGIAQPARRYGEYPHHLSGG MRQRVMIAMAIICAPRLLIADEPTTALDVTVQAQIITLLRDLSERTGMALLFITHDLGVVAETCTRMLTMYAGEVVEDAA TDAALMRPRHPYTSGLLRSLPRLTPWRARLGSIPGRVPAPGAMPAGCRYRARCTFAAPACSAEQGLLQIGGAPVAPHWAR CVRAQELELAGAVSP
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=252, Percent_Identity=26.1904761904762, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4505771, Length=252, Percent_Identity=26.1904761904762, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI9961252, Length=252, Percent_Identity=26.1904761904762, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI42741659, Length=219, Percent_Identity=28.310502283105, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI9665248, Length=251, Percent_Identity=28.2868525896414, Blast_Score=72, Evalue=6e-13, Organism=Escherichia coli, GI1789963, Length=304, Percent_Identity=48.3552631578947, Blast_Score=292, Evalue=2e-80, Organism=Escherichia coli, GI48994883, Length=297, Percent_Identity=44.4444444444444, Blast_Score=261, Evalue=6e-71, Organism=Escherichia coli, GI1787759, Length=301, Percent_Identity=44.1860465116279, Blast_Score=253, Evalue=1e-68, Organism=Escherichia coli, GI145693107, Length=266, Percent_Identity=46.6165413533835, Blast_Score=233, Evalue=2e-62, Organism=Escherichia coli, GI1788506, Length=265, Percent_Identity=46.0377358490566, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI1787548, Length=306, Percent_Identity=37.2549019607843, Blast_Score=202, Evalue=3e-53, Organism=Escherichia coli, GI1787500, Length=316, Percent_Identity=37.6582278481013, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1789962, Length=324, Percent_Identity=36.1111111111111, Blast_Score=196, Evalue=2e-51, Organism=Escherichia coli, GI1787758, Length=318, Percent_Identity=34.2767295597484, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=37.0656370656371, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=38.8185654008439, Blast_Score=145, Evalue=5e-36, Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=36.4864864864865, Blast_Score=126, Evalue=3e-30, Organism=Escherichia coli, GI1786398, Length=272, Percent_Identity=29.4117647058824, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=27.2727272727273, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789032, Length=254, Percent_Identity=32.2834645669291, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI87081834, Length=235, Percent_Identity=31.9148936170213, Blast_Score=104, Evalue=9e-24, Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=30.4526748971193, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1787370, Length=252, Percent_Identity=30.5555555555556, Blast_Score=101, Evalue=9e-23, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=34.6666666666667, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=28.3950617283951, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787712, Length=238, Percent_Identity=29.8319327731092, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI87081791, Length=256, Percent_Identity=31.25, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=34.2995169082126, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87081709, Length=235, Percent_Identity=29.7872340425532, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788761, Length=248, Percent_Identity=29.0322580645161, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787105, Length=236, Percent_Identity=30.9322033898305, Blast_Score=92, Evalue=7e-20, Organism=Escherichia coli, GI1788644, Length=176, Percent_Identity=32.3863636363636, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=33.0275229357798, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788225, Length=263, Percent_Identity=29.277566539924, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786872, Length=218, Percent_Identity=29.3577981651376, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790467, Length=258, Percent_Identity=26.3565891472868, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786319, Length=265, Percent_Identity=26.7924528301887, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1790162, Length=246, Percent_Identity=26.4227642276423, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788450, Length=240, Percent_Identity=27.9166666666667, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1786253, Length=244, Percent_Identity=27.4590163934426, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790739, Length=253, Percent_Identity=28.0632411067194, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786345, Length=254, Percent_Identity=27.9527559055118, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786563, Length=223, Percent_Identity=29.5964125560538, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787164, Length=235, Percent_Identity=31.9148936170213, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789991, Length=230, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786803, Length=227, Percent_Identity=25.5506607929515, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082267, Length=239, Percent_Identity=29.2887029288703, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790544, Length=220, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=25.1141552511416, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790534, Length=236, Percent_Identity=27.5423728813559, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=28.9719626168224, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787112, Length=253, Percent_Identity=26.0869565217391, Blast_Score=61, Evalue=9e-11, Organism=Escherichia coli, GI1786654, Length=224, Percent_Identity=27.2321428571429, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI212646699, Length=242, Percent_Identity=27.6859504132231, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193209708, Length=236, Percent_Identity=26.271186440678, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI193208177, Length=255, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115534520, Length=238, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17569143, Length=237, Percent_Identity=28.6919831223629, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193202349, Length=241, Percent_Identity=24.0663900414938, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17558664, Length=235, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17567265, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533592, Length=222, Percent_Identity=28.8288288288288, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17569145, Length=225, Percent_Identity=27.1111111111111, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=238, Percent_Identity=28.1512605042017, Blast_Score=79, Evalue=9e-16, Organism=Drosophila melanogaster, GI85726357, Length=257, Percent_Identity=31.5175097276265, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI17136662, Length=230, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI281363262, Length=266, Percent_Identity=28.1954887218045, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24653245, Length=266, Percent_Identity=28.1954887218045, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24641565, Length=233, Percent_Identity=30.0429184549356, Blast_Score=68, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36195; Mature: 36064
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALNQPLLSLRDVTVAFHTAHGELPVTRKVAFDIARGERVGLVGESGCGKTVTGLAVMRL CCCCCCHHHHHHEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH LPPQVARIAGRIDFGGRDLAQLPEREMRAVRGRDIAMIFQEPMSALDPVFTVGTQISEAW CCHHHHHHHHCCCCCCCCHHHCCHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH LAHHPGHPAQARLRAIEALAQVGIAQPARRYGEYPHHLSGGMRQRVMIAMAIICAPRLLI HHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCEEE ADEPTTALDVTVQAQIITLLRDLSERTGMALLFITHDLGVVAETCTRMLTMYAGEVVEDA ECCCCCEEEEEHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH ATDAALMRPRHPYTSGLLRSLPRLTPWRARLGSIPGRVPAPGAMPAGCRYRARCTFAAPA HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCC CSAEQGLLQIGGAPVAPHWARCVRAQELELAGAVSP CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ALNQPLLSLRDVTVAFHTAHGELPVTRKVAFDIARGERVGLVGESGCGKTVTGLAVMRL CCCCCHHHHHHEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH LPPQVARIAGRIDFGGRDLAQLPEREMRAVRGRDIAMIFQEPMSALDPVFTVGTQISEAW CCHHHHHHHHCCCCCCCCHHHCCHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH LAHHPGHPAQARLRAIEALAQVGIAQPARRYGEYPHHLSGGMRQRVMIAMAIICAPRLLI HHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCEEE ADEPTTALDVTVQAQIITLLRDLSERTGMALLFITHDLGVVAETCTRMLTMYAGEVVEDA ECCCCCEEEEEHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH ATDAALMRPRHPYTSGLLRSLPRLTPWRARLGSIPGRVPAPGAMPAGCRYRARCTFAAPA HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCC CSAEQGLLQIGGAPVAPHWARCVRAQELELAGAVSP CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]