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The map label for this gene is ycfJ [H]

Identifier: 121610310

GI number: 121610310

Start: 3748303

End: 3748947

Strand: Direct

Name: ycfJ [H]

Synonym: Veis_3376

Alternate gene names: 121610310

Gene position: 3748303-3748947 (Clockwise)

Preceding gene: 121610309

Following gene: 121610319

Centisome position: 67.33

GC content: 67.6

Gene sequence:

>645_bases
ATGAAAAAGACCCTTATCTTTTCCGCCGTCGCCATCATCGCCGGCACCGCCGGCGCACAGGAACAAGGCCGCGTGCTGTC
GGCCACGCCGATCGTGCAACAGGTGGGCACCCCGCGGCAGGTGTGCGGCAACGAAACCGTGTACAGCGGCAACCGCACCA
GTGGCGCCGGGGCCGTGATGGGCGCAATCGCCGGCGGTGCCGCCGGCAACGCCGTTGGCAAAGGCACCGGTCGTGCCGCC
GCAACCGCCATCGGTGTGCTGGGCGGAGCAATACTCGGCAACCAGATCGAAGGCGGTCAACCCCAGTACCAGAACGTGCA
GCGCTGCACGACCGAGACCTACTACGAGAACCGCACCGTCGGCTACGACGTGGTCTACGAATACGCCGGGCGCCAGTACA
GCACGCGCACGCAAAACGACCCGGGCCACTGGATCAGCCTGAGCGTGCAGCCGACGGGCCAGACCTACTCCGCGCCGCCG
CCGGTCATCTACAGCCAGCCTGGCGTGGTGACCTCGACCTGGTCCGTAGCGCCGGTCTACCCGCCGCCGCCCATCCATCT
GACTCCGCCGGTCACGGTGATCGAATATGGCTACGACAGCGGGCGCCCCGACTACCCGCACCACCGCAACCCCTACTGGC
GCTGA

Upstream 100 bases:

>100_bases
GGAAATGACAGGAACAGGGGCCAAGGCAGGAACTGTGCTTGCGGGCCGCAACTTTTCAACCGCCTGGTGCGTTGAGTACC
CACCCGAAAGGAGTTTTCCA

Downstream 100 bases:

>100_bases
GCCGGCCGCTGATCGATATACGGCGACGTTGCGGCCGCATCGCGCTTTGCCCTGAGCATGAAGTCCACCGTCTGTCCAGA
CCGATCCACCGCCCGGTAAA

Product: 17 kDa surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MKKTLIFSAVAIIAGTAGAQEQGRVLSATPIVQQVGTPRQVCGNETVYSGNRTSGAGAVMGAIAGGAAGNAVGKGTGRAA
ATAIGVLGGAILGNQIEGGQPQYQNVQRCTTETYYENRTVGYDVVYEYAGRQYSTRTQNDPGHWISLSVQPTGQTYSAPP
PVIYSQPGVVTSTWSVAPVYPPPPIHLTPPVTVIEYGYDSGRPDYPHHRNPYWR

Sequences:

>Translated_214_residues
MKKTLIFSAVAIIAGTAGAQEQGRVLSATPIVQQVGTPRQVCGNETVYSGNRTSGAGAVMGAIAGGAAGNAVGKGTGRAA
ATAIGVLGGAILGNQIEGGQPQYQNVQRCTTETYYENRTVGYDVVYEYAGRQYSTRTQNDPGHWISLSVQPTGQTYSAPP
PVIYSQPGVVTSTWSVAPVYPPPPIHLTPPVTVIEYGYDSGRPDYPHHRNPYWR
>Mature_214_residues
MKKTLIFSAVAIIAGTAGAQEQGRVLSATPIVQQVGTPRQVCGNETVYSGNRTSGAGAVMGAIAGGAAGNAVGKGTGRAA
ATAIGVLGGAILGNQIEGGQPQYQNVQRCTTETYYENRTVGYDVVYEYAGRQYSTRTQNDPGHWISLSVQPTGQTYSAPP
PVIYSQPGVVTSTWSVAPVYPPPPIHLTPPVTVIEYGYDSGRPDYPHHRNPYWR

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=135, Percent_Identity=40.7407407407407, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 22611; Mature: 22611

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLIFSAVAIIAGTAGAQEQGRVLSATPIVQQVGTPRQVCGNETVYSGNRTSGAGAVM
CCCHHHHHHHHHHHCCCCCHHCCCEEEECHHHHHCCCCHHHHCCCEEECCCCCCCCHHHH
GAIAGGAAGNAVGKGTGRAAATAIGVLGGAILGNQIEGGQPQYQNVQRCTTETYYENRTV
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
GYDVVYEYAGRQYSTRTQNDPGHWISLSVQPTGQTYSAPPPVIYSQPGVVTSTWSVAPVY
CHHHHHHHCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCEEEECCCEEECC
PPPPIHLTPPVTVIEYGYDSGRPDYPHHRNPYWR
CCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKTLIFSAVAIIAGTAGAQEQGRVLSATPIVQQVGTPRQVCGNETVYSGNRTSGAGAVM
CCCHHHHHHHHHHHCCCCCHHCCCEEEECHHHHHCCCCHHHHCCCEEECCCCCCCCHHHH
GAIAGGAAGNAVGKGTGRAAATAIGVLGGAILGNQIEGGQPQYQNVQRCTTETYYENRTV
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
GYDVVYEYAGRQYSTRTQNDPGHWISLSVQPTGQTYSAPPPVIYSQPGVVTSTWSVAPVY
CHHHHHHHCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCEEEECCCEEECC
PPPPIHLTPPVTVIEYGYDSGRPDYPHHRNPYWR
CCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]