Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 121610295

GI number: 121610295

Start: 3731865

End: 3732440

Strand: Direct

Name: xerD [C]

Synonym: Veis_3359

Alternate gene names: 121610295

Gene position: 3731865-3732440 (Clockwise)

Preceding gene: 121610293

Following gene: 121610296

Centisome position: 67.04

GC content: 61.28

Gene sequence:

>576_bases
ATGCGCGCGGCCAAGCGCTGCGGGATATTCGGAGGACTTCGGATCTCCGAGGTCTGCAACAACTCCATGGGCGACTTCTA
CTGGCGTCGGAGTGCGGACAGGCGCGAGCGCTGGTGGCTGGAGATCCGGGGCAAGGGAGAAAGAACGCGGGGGATCCCGG
CAACGGACGAACTGGTGTCGGAGTTGATGCGCTACCGAAAGGCGCATGAACTGTCCCCGCTTCCGCGCGAGGGCGATATT
CTTCCGCTACTGGTGCCTCTCATCGGTGGTGCCCGCCCCATGGGGCGCAGTGGCGTGCACGAACTGGTCAAGAATATCTT
TCGCAAAACCGCCGTGCGTCTGCGGGCGCGTGGCCCTGACCATGAGGCGGCAGCTGCTCATGTGGAGCAAGCCTCTGCCC
ACTGGATGCGTCATACGGCGGGGACCCATCAAAGTGACAACATGGATCTCAAAGTCGTGCGTGACAACTTGGGACATGCG
AACATTGCCACGACCAGCATCTACATACACACAGAGGGCGATAAGCGCCATGACCAGACCTCCAGCTTGCACAAGCTGGG
ATGGCTGGCACCCTAA

Upstream 100 bases:

>100_bases
CTTGCGCACCTTGCCCTTGGTATCGACGATCTCCTTGGCGAACATGCTGGGGCGATGCAGGTTCACGTAGGGATTCAGAT
GCTCGCGGCAGAACGTATCG

Downstream 100 bases:

>100_bases
GGTTCGTGCTTGGACGGCGATGTCAGATGCCGATGAGATGCTGACACTCAGGCTCAAACTCCTCGGCCTTCTGCCAATCT
TGATCTGCTCGCACCGAATC

Product: phage integrase family protein

Products: NA

Alternate protein names: Phage Integrase; Phage Integrase Family Protein; Integrase/Recombinase Protein; Integrase/Recombinase; Site Specific Recombinase Phage Integrase Family; Integrase; Integrase / Recombinase Protein; Site-Specific Recombinase; Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; Phage IntegrasePhage Integrase N-Terminal SAM-Like

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MRAAKRCGIFGGLRISEVCNNSMGDFYWRRSADRRERWWLEIRGKGERTRGIPATDELVSELMRYRKAHELSPLPREGDI
LPLLVPLIGGARPMGRSGVHELVKNIFRKTAVRLRARGPDHEAAAAHVEQASAHWMRHTAGTHQSDNMDLKVVRDNLGHA
NIATTSIYIHTEGDKRHDQTSSLHKLGWLAP

Sequences:

>Translated_191_residues
MRAAKRCGIFGGLRISEVCNNSMGDFYWRRSADRRERWWLEIRGKGERTRGIPATDELVSELMRYRKAHELSPLPREGDI
LPLLVPLIGGARPMGRSGVHELVKNIFRKTAVRLRARGPDHEAAAAHVEQASAHWMRHTAGTHQSDNMDLKVVRDNLGHA
NIATTSIYIHTEGDKRHDQTSSLHKLGWLAP
>Mature_191_residues
MRAAKRCGIFGGLRISEVCNNSMGDFYWRRSADRRERWWLEIRGKGERTRGIPATDELVSELMRYRKAHELSPLPREGDI
LPLLVPLIGGARPMGRSGVHELVKNIFRKTAVRLRARGPDHEAAAAHVEQASAHWMRHTAGTHQSDNMDLKVVRDNLGHA
NIATTSIYIHTEGDKRHDQTSSLHKLGWLAP

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21611; Mature: 21611

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAKRCGIFGGLRISEVCNNSMGDFYWRRSADRRERWWLEIRGKGERTRGIPATDELVS
CCCCHHCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH
ELMRYRKAHELSPLPREGDILPLLVPLIGGARPMGRSGVHELVKNIFRKTAVRLRARGPD
HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
HEAAAAHVEQASAHWMRHTAGTHQSDNMDLKVVRDNLGHANIATTSIYIHTEGDKRHDQT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCHHH
SSLHKLGWLAP
HHHHHHCCCCC
>Mature Secondary Structure
MRAAKRCGIFGGLRISEVCNNSMGDFYWRRSADRRERWWLEIRGKGERTRGIPATDELVS
CCCCHHCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH
ELMRYRKAHELSPLPREGDILPLLVPLIGGARPMGRSGVHELVKNIFRKTAVRLRARGPD
HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
HEAAAAHVEQASAHWMRHTAGTHQSDNMDLKVVRDNLGHANIATTSIYIHTEGDKRHDQT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCHHH
SSLHKLGWLAP
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA