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The map label for this gene is ywbI [H]

Identifier: 121610251

GI number: 121610251

Start: 3692830

End: 3693765

Strand: Direct

Name: ywbI [H]

Synonym: Veis_3310

Alternate gene names: 121610251

Gene position: 3692830-3693765 (Clockwise)

Preceding gene: 121610250

Following gene: 121610257

Centisome position: 66.34

GC content: 58.12

Gene sequence:

>936_bases
ATGAGTATATCGATTCGTACCCTGCAATACTTCAATGCCGTTGCCGAGACTGGTTCCATCTCGGCTGCGATGCAGACGCT
CGACATCTCACAGGCTGCCATTACCGAGGCGATTCAACGCCTGGAGGCGCATCTCGGTTCCATGCTGTTCCGGCGTCATG
CCCGTGGCATGGCACTCACACATGCGGGCCACGAATTCTTGCGCCATAGCCACCTCATACTCAATGCAGTTTCCTCTGCT
GAAAATGCCCTGGCCGTGCGTCCTGATGCGATGACCGGAGAATTATCGATCGGCGCAGTATCGCCACTCATGGGTTATTA
CTTGCCAGGGTTGCTGGAGCGGTTTCGGCGTAGTTTCCCGCGCGTCACTGTGCGCATCATCGAAGAGTCCGGATCGACGA
TTGAGCATCTGATAGTCAACGGCGAAATCGATGTTGCGCTGACGCTGACTTCGCACCTGGAGAATCATCATGCCTTTCAC
ACGTTGCAATTGGTTCGCTCACCCTGGCACCTATGGCTACCTACCGGGCATCGCCTGGTCGGCGCGAAACCGGTAACCCT
GCGCGAATTGCATAATGAAGCCGTGATCGTGTTGCGTAATGACGAACTCGAACGCACTACGGGAGACCTGTGGCTGCGCG
AGAGTGTCAGACCACGCATCGTTGCCAAGACACGATCCGTGGAGGCGGTGCGAAGCCTGGTGGCGACGGGCAACGGAATT
TGCGTCCTGCCGGAGGTGCTATTTCGTCAGTGGTCGAGCGAGGGGCTGCGCCTGATCGCCCAGCCGCTGCGCAACGAGCC
TGCCACATTGGAACTGGGGCTGATCTGGAGGCGCGGTGCCAAAGTCTCCGCAGCAATCAGTGCCTTTACCACGACGGCCA
GTAACTACTCGGTGCCACAGTTCCACAGCCCGGCCCATCAAGCAAAACGAGGCTGA

Upstream 100 bases:

>100_bases
TTGACGAGGTTCAAGGAAGGCCGCATAGTGCATTGTCACACGTTGCAACTATTGGGCTATCTGGGGACATTGCCCGATAG
CTGACTGGCATCATGATCAG

Downstream 100 bases:

>100_bases
AGCGGCAAGCCTCACAGGGCTTGGGTAAGCGCATCGAAAAGATGGGCCCCTGCCTGTGCAGGCTCACCAAGCCCGGCCAA
GGCAGCCCGGGAATCCCAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSISIRTLQYFNAVAETGSISAAMQTLDISQAAITEAIQRLEAHLGSMLFRRHARGMALTHAGHEFLRHSHLILNAVSSA
ENALAVRPDAMTGELSIGAVSPLMGYYLPGLLERFRRSFPRVTVRIIEESGSTIEHLIVNGEIDVALTLTSHLENHHAFH
TLQLVRSPWHLWLPTGHRLVGAKPVTLRELHNEAVIVLRNDELERTTGDLWLRESVRPRIVAKTRSVEAVRSLVATGNGI
CVLPEVLFRQWSSEGLRLIAQPLRNEPATLELGLIWRRGAKVSAAISAFTTTASNYSVPQFHSPAHQAKRG

Sequences:

>Translated_311_residues
MSISIRTLQYFNAVAETGSISAAMQTLDISQAAITEAIQRLEAHLGSMLFRRHARGMALTHAGHEFLRHSHLILNAVSSA
ENALAVRPDAMTGELSIGAVSPLMGYYLPGLLERFRRSFPRVTVRIIEESGSTIEHLIVNGEIDVALTLTSHLENHHAFH
TLQLVRSPWHLWLPTGHRLVGAKPVTLRELHNEAVIVLRNDELERTTGDLWLRESVRPRIVAKTRSVEAVRSLVATGNGI
CVLPEVLFRQWSSEGLRLIAQPLRNEPATLELGLIWRRGAKVSAAISAFTTTASNYSVPQFHSPAHQAKRG
>Mature_310_residues
SISIRTLQYFNAVAETGSISAAMQTLDISQAAITEAIQRLEAHLGSMLFRRHARGMALTHAGHEFLRHSHLILNAVSSAE
NALAVRPDAMTGELSIGAVSPLMGYYLPGLLERFRRSFPRVTVRIIEESGSTIEHLIVNGEIDVALTLTSHLENHHAFHT
LQLVRSPWHLWLPTGHRLVGAKPVTLRELHNEAVIVLRNDELERTTGDLWLRESVRPRIVAKTRSVEAVRSLVATGNGIC
VLPEVLFRQWSSEGLRLIAQPLRNEPATLELGLIWRRGAKVSAAISAFTTTASNYSVPQFHSPAHQAKRG

Specific function: Could Be The Regulator Of The Abg Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=246, Percent_Identity=26.4227642276423, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI157672245, Length=287, Percent_Identity=27.5261324041812, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787806, Length=281, Percent_Identity=26.3345195729537, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787879, Length=296, Percent_Identity=29.3918918918919, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=26.8211920529801, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790399, Length=282, Percent_Identity=24.468085106383, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789506, Length=296, Percent_Identity=24.6621621621622, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=287, Percent_Identity=27.5261324041812, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788296, Length=238, Percent_Identity=26.890756302521, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789204, Length=260, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=303, Percent_Identity=25.7425742574257, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=263, Percent_Identity=24.7148288973384, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI2367136, Length=263, Percent_Identity=27.3764258555133, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=29.2134831460674, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=23.972602739726, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788626, Length=245, Percent_Identity=26.530612244898, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082132, Length=145, Percent_Identity=28.9655172413793, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788481, Length=311, Percent_Identity=24.4372990353698, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=232, Percent_Identity=24.5689655172414, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34431; Mature: 34300

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISIRTLQYFNAVAETGSISAAMQTLDISQAAITEAIQRLEAHLGSMLFRRHARGMALT
CCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEH
HAGHEFLRHSHLILNAVSSAENALAVRPDAMTGELSIGAVSPLMGYYLPGLLERFRRSFP
HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCC
RVTVRIIEESGSTIEHLIVNGEIDVALTLTSHLENHHAFHTLQLVRSPWHLWLPTGHRLV
CEEEEEEECCCCEEEEEEECCCEEEEEEEHHHHCCHHHHHHHHHHHCCCEEECCCCCEEE
GAKPVTLRELHNEAVIVLRNDELERTTGDLWLRESVRPRIVAKTRSVEAVRSLVATGNGI
CCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCE
CVLPEVLFRQWSSEGLRLIAQPLRNEPATLELGLIWRRGAKVSAAISAFTTTASNYSVPQ
EEHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCC
FHSPAHQAKRG
CCCCHHHCCCC
>Mature Secondary Structure 
SISIRTLQYFNAVAETGSISAAMQTLDISQAAITEAIQRLEAHLGSMLFRRHARGMALT
CEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEH
HAGHEFLRHSHLILNAVSSAENALAVRPDAMTGELSIGAVSPLMGYYLPGLLERFRRSFP
HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCC
RVTVRIIEESGSTIEHLIVNGEIDVALTLTSHLENHHAFHTLQLVRSPWHLWLPTGHRLV
CEEEEEEECCCCEEEEEEECCCEEEEEEEHHHHCCHHHHHHHHHHHCCCEEECCCCCEEE
GAKPVTLRELHNEAVIVLRNDELERTTGDLWLRESVRPRIVAKTRSVEAVRSLVATGNGI
CCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCE
CVLPEVLFRQWSSEGLRLIAQPLRNEPATLELGLIWRRGAKVSAAISAFTTTASNYSVPQ
EEHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCC
FHSPAHQAKRG
CCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]