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The map label for this gene is yhcK [H]

Identifier: 121610229

GI number: 121610229

Start: 3668810

End: 3669571

Strand: Direct

Name: yhcK [H]

Synonym: Veis_3288

Alternate gene names: 121610229

Gene position: 3668810-3669571 (Clockwise)

Preceding gene: 121610228

Following gene: 121610230

Centisome position: 65.91

GC content: 70.21

Gene sequence:

>762_bases
GTGTCTGACTCTGCGGCCTCTTCTTTCGTGGATCTGCGCGACCTGCGCCTGGATGCGGCCCATGCGCTGCTGGCCCAGGC
AGGCGGCTACCAGACCGCCTGGCAGGGCGCAACGGCGCCTGCGCGTTACTTGCAGGGCCTGATCGACGGCCTGTGCGAAC
TGTCCCTTCTGGACCCCCTGACGGGCCTGGCCAGCCGCAGGCAGTTGCAGGCAGTGCAAGAGCGCGAGATCGACCGCGTG
ACCCGCTCGGGCGAGACCGCCTTGCTGCTGATGCTCGCCATCGACCATTCCAAGCCACTGAGCGACAGGCCCGAGCACCG
GGCCGGCGCCATGGTGCTGCAATCGGTGGCCCGCACACTCAGCGCCTGCCTGCGCCCCATGGACACCCTGGCGTGCTGTG
GCGACGCCGCCTTCGCCGTGGTTCTGCCCGCTTGCCATGCCGGGTTCGGCCAGGTGGTGGCCGAGCGCATCCGGCGCGTC
GTGGCGAACGCGCCGATCCAGCTCTCGGCCGCAGTGGCGCTGGATGTCACGGTGAGCATCGGCGGCGCGTTTGCGCTGCC
GGGGCTGCGCTCGACGGCACGGCTGTGGAGCGACCGGGCCGAGCAGCAACTCGCCCAGGCCCGATCGGCAGGCTGCAACC
GCATCAGCATCGAGGCGCAGGCCGACAGCACCGTCAGCGCCGAAGAAAAAAGCCTGTTGTTTGGCCCGCGCCGCCCTCCG
CCCTCGGGCTGCTCGCTGGACCCGGCCGACAATGCCTATTGA

Upstream 100 bases:

>100_bases
TCTCGAGCCTGGGCCGATGGCCCGGGTCTGAGCGCCGCCGGATGGCTTTGTGCCGTCTGACGCACTGCTACACTGCAAGC
CAACTTTTTGGGCTTGACCG

Downstream 100 bases:

>100_bases
AAGTCAGACGATGAGCGCCGCGCCGTCCCTCCCACCCGCAGCGCCAGCCGCCCCGGCTGGACCGGCCGCAGCGGTGTCCG
CCGGCTCGGCGGGCGCCCGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSDSAASSFVDLRDLRLDAAHALLAQAGGYQTAWQGATAPARYLQGLIDGLCELSLLDPLTGLASRRQLQAVQEREIDRV
TRSGETALLLMLAIDHSKPLSDRPEHRAGAMVLQSVARTLSACLRPMDTLACCGDAAFAVVLPACHAGFGQVVAERIRRV
VANAPIQLSAAVALDVTVSIGGAFALPGLRSTARLWSDRAEQQLAQARSAGCNRISIEAQADSTVSAEEKSLLFGPRRPP
PSGCSLDPADNAY

Sequences:

>Translated_253_residues
MSDSAASSFVDLRDLRLDAAHALLAQAGGYQTAWQGATAPARYLQGLIDGLCELSLLDPLTGLASRRQLQAVQEREIDRV
TRSGETALLLMLAIDHSKPLSDRPEHRAGAMVLQSVARTLSACLRPMDTLACCGDAAFAVVLPACHAGFGQVVAERIRRV
VANAPIQLSAAVALDVTVSIGGAFALPGLRSTARLWSDRAEQQLAQARSAGCNRISIEAQADSTVSAEEKSLLFGPRRPP
PSGCSLDPADNAY
>Mature_252_residues
SDSAASSFVDLRDLRLDAAHALLAQAGGYQTAWQGATAPARYLQGLIDGLCELSLLDPLTGLASRRQLQAVQEREIDRVT
RSGETALLLMLAIDHSKPLSDRPEHRAGAMVLQSVARTLSACLRPMDTLACCGDAAFAVVLPACHAGFGQVVAERIRRVV
ANAPIQLSAAVALDVTVSIGGAFALPGLRSTARLWSDRAEQQLAQARSAGCNRISIEAQADSTVSAEEKSLLFGPRRPPP
SGCSLDPADNAY

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=199, Percent_Identity=27.6381909547739, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 26715; Mature: 26583

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSAASSFVDLRDLRLDAAHALLAQAGGYQTAWQGATAPARYLQGLIDGLCELSLLDPL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TGLASRRQLQAVQEREIDRVTRSGETALLLMLAIDHSKPLSDRPEHRAGAMVLQSVARTL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
SACLRPMDTLACCGDAAFAVVLPACHAGFGQVVAERIRRVVANAPIQLSAAVALDVTVSI
HHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEC
GGAFALPGLRSTARLWSDRAEQQLAQARSAGCNRISIEAQADSTVSAEEKSLLFGPRRPP
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHEECCCCCC
PSGCSLDPADNAY
CCCCCCCCCCCCC
>Mature Secondary Structure 
SDSAASSFVDLRDLRLDAAHALLAQAGGYQTAWQGATAPARYLQGLIDGLCELSLLDPL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TGLASRRQLQAVQEREIDRVTRSGETALLLMLAIDHSKPLSDRPEHRAGAMVLQSVARTL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
SACLRPMDTLACCGDAAFAVVLPACHAGFGQVVAERIRRVVANAPIQLSAAVALDVTVSI
HHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEC
GGAFALPGLRSTARLWSDRAEQQLAQARSAGCNRISIEAQADSTVSAEEKSLLFGPRRPP
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHEECCCCCC
PSGCSLDPADNAY
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]