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The map label for this gene is pecT [H]

Identifier: 121610045

GI number: 121610045

Start: 3450121

End: 3451041

Strand: Direct

Name: pecT [H]

Synonym: Veis_3101

Alternate gene names: 121610045

Gene position: 3450121-3451041 (Clockwise)

Preceding gene: 121610043

Following gene: 121610046

Centisome position: 61.98

GC content: 63.84

Gene sequence:

>921_bases
ATGCTCCGTGGACGCCTGCTCGCACCCGAATTGCTGCGTGCTTTTGTTGCGGTGGTGGAGTGCAATGGCTACACACCCGC
CGCCCACTACCTGCATCGCACCCAGGCCGCGGTCAGCCAGCAGATCTCGCGGCTGGAAGATTGCATTGGCGCCGATCTGT
TCGAAAAGCCCACGAGGCAGCTGAAGCTGAGCGGGCAGGGCAAAGTGCTGCTCGGCTATGCCCGCCGCCTGCTGGCCTTG
AACAATGAGGCGATGGAAAAACTGCGTCCTGGAATCGTGAGTGGAGCAGTACGCATGGGAGCGACGAACTGCTACGCCAC
CACGGTGCTCCCGTTGCTGCTGGCCGAGTTCTCCGAGCTTTATCCCGCCATCCATATCGACCTGGAGGTCGGCGTCGCCG
AGGAGATGCAGAGGAAGCTGGGGCCTGCCTTCGATCTCACGATCAATGCCTTCCAGGGCGGCGAAGGCAATGGCGTCCTG
CTGCGCAAGGACCCCGTGGTCTGGGCGATGTCCCATCGGGCCAGGCCGCATCTCAAGACACCCATTCCCCTGGCAGTACT
TCCGCAGGGATCGCTGCTCAGGCGGTGGGCCCAAGAAGCGTTGACGGCGGCCGGACGGCGCTGGGTGGTGGTGCAAGAGA
GTTCCAGCGTGGAAGTCCTGAAGGCCTGCGTTCTGGCGGGACTGGCGGTCGGGGGTTTTCAGGACTCGACCGTTCGGGCG
GCCCCGGGGCTGCGCCTCCTCCTGCCAGAAGAAGGGTTCCCCACCCTGCCGTCGACCGAGATGTGGCTGGAGCGGGCAGA
CCGCGAATTGCCTCGGGCGGCCAAGTGCCTTTATGAGTTCTTGCTGGAGCAGTTGCCTCCATGGGAGGTCCAAGAATCCG
CTCTTGCGTCGGATAGTGCAGGCGAGATTGCGCAAGGGTGA

Upstream 100 bases:

>100_bases
TGCGCGACACAACAATTGGGAAGCGCGGGCGGCAATGGAACGAGACGTCGAATCGCAAGCGGCATCGCGGGAATATGACG
ATCTCGAGGGCCGCAAGGAC

Downstream 100 bases:

>100_bases
ACGGATCACCGGTTTCAACTGAATGGCGAGCCGATGCTCAGGACCGGGGGGATCGGCGGCGTAGACTTGCCCGATGCGGC
GATGCGGTGCGTTGAGCGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLRGRLLAPELLRAFVAVVECNGYTPAAHYLHRTQAAVSQQISRLEDCIGADLFEKPTRQLKLSGQGKVLLGYARRLLAL
NNEAMEKLRPGIVSGAVRMGATNCYATTVLPLLLAEFSELYPAIHIDLEVGVAEEMQRKLGPAFDLTINAFQGGEGNGVL
LRKDPVVWAMSHRARPHLKTPIPLAVLPQGSLLRRWAQEALTAAGRRWVVVQESSSVEVLKACVLAGLAVGGFQDSTVRA
APGLRLLLPEEGFPTLPSTEMWLERADRELPRAAKCLYEFLLEQLPPWEVQESALASDSAGEIAQG

Sequences:

>Translated_306_residues
MLRGRLLAPELLRAFVAVVECNGYTPAAHYLHRTQAAVSQQISRLEDCIGADLFEKPTRQLKLSGQGKVLLGYARRLLAL
NNEAMEKLRPGIVSGAVRMGATNCYATTVLPLLLAEFSELYPAIHIDLEVGVAEEMQRKLGPAFDLTINAFQGGEGNGVL
LRKDPVVWAMSHRARPHLKTPIPLAVLPQGSLLRRWAQEALTAAGRRWVVVQESSSVEVLKACVLAGLAVGGFQDSTVRA
APGLRLLLPEEGFPTLPSTEMWLERADRELPRAAKCLYEFLLEQLPPWEVQESALASDSAGEIAQG
>Mature_306_residues
MLRGRLLAPELLRAFVAVVECNGYTPAAHYLHRTQAAVSQQISRLEDCIGADLFEKPTRQLKLSGQGKVLLGYARRLLAL
NNEAMEKLRPGIVSGAVRMGATNCYATTVLPLLLAEFSELYPAIHIDLEVGVAEEMQRKLGPAFDLTINAFQGGEGNGVL
LRKDPVVWAMSHRARPHLKTPIPLAVLPQGSLLRRWAQEALTAAGRRWVVVQESSSVEVLKACVLAGLAVGGFQDSTVRA
APGLRLLLPEEGFPTLPSTEMWLERADRELPRAAKCLYEFLLEQLPPWEVQESALASDSAGEIAQG

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=281, Percent_Identity=32.7402135231317, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1787806, Length=242, Percent_Identity=28.099173553719, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693105, Length=141, Percent_Identity=32.6241134751773, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI157672245, Length=129, Percent_Identity=31.7829457364341, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789173, Length=227, Percent_Identity=30.3964757709251, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33406; Mature: 33406

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRGRLLAPELLRAFVAVVECNGYTPAAHYLHRTQAAVSQQISRLEDCIGADLFEKPTRQ
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHH
LKLSGQGKVLLGYARRLLALNNEAMEKLRPGIVSGAVRMGATNCYATTVLPLLLAEFSEL
EEECCCCCCHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
YPAIHIDLEVGVAEEMQRKLGPAFDLTINAFQGGEGNGVLLRKDPVVWAMSHRARPHLKT
CCEEEEEEECCHHHHHHHHCCCEEEEEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCC
PIPLAVLPQGSLLRRWAQEALTAAGRRWVVVQESSSVEVLKACVLAGLAVGGFQDSTVRA
CCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEC
APGLRLLLPEEGFPTLPSTEMWLERADRELPRAAKCLYEFLLEQLPPWEVQESALASDSA
CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
GEIAQG
CCCCCC
>Mature Secondary Structure
MLRGRLLAPELLRAFVAVVECNGYTPAAHYLHRTQAAVSQQISRLEDCIGADLFEKPTRQ
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHH
LKLSGQGKVLLGYARRLLALNNEAMEKLRPGIVSGAVRMGATNCYATTVLPLLLAEFSEL
EEECCCCCCHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
YPAIHIDLEVGVAEEMQRKLGPAFDLTINAFQGGEGNGVLLRKDPVVWAMSHRARPHLKT
CCEEEEEEECCHHHHHHHHCCCEEEEEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCC
PIPLAVLPQGSLLRRWAQEALTAAGRRWVVVQESSSVEVLKACVLAGLAVGGFQDSTVRA
CCCEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEC
APGLRLLLPEEGFPTLPSTEMWLERADRELPRAAKCLYEFLLEQLPPWEVQESALASDSA
CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
GEIAQG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]