| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is fabG [C]
Identifier: 121609949
GI number: 121609949
Start: 3354095
End: 3354856
Strand: Direct
Name: fabG [C]
Synonym: Veis_3005
Alternate gene names: 121609949
Gene position: 3354095-3354856 (Clockwise)
Preceding gene: 121609948
Following gene: 121609950
Centisome position: 60.25
GC content: 66.67
Gene sequence:
>762_bases ATGCGCGTGCAAAACCAATCCATCATCGTCACCGGCGCCGGCAGCGGCATCGGCGAAGGCATCGCCAAACGCCTGGCCGC TGAAGGCGGCAAAGTCATCGTCAACGACATCGATGCCGCCAGCGGCCAGCGCGTGGTGGCCGACATCACCGCCGCAGGCG GCACAGCCAGCTTCTTCCAGGCCGACATGACCCGCTCCGCCCAGGTCGAGGCCCTGATCGACGAAGCCCTGCGCCGCAAC GGGCGGCTCGACGTGATGGTCAACAACGCCGGCTGGACACACCGCAACCGCCCCCTGCTCGAAGTCAGCGAAGACGAGTT CGACAAGGTCTACGCCATCAACGTGAAAAGCATCTACCTGAGCGCCATCCACGCCGTGCCGGCGATGCGCAAAGCCGGCG GCGGCAGCTTCATCAACATCGCCTCCACCGCCGGACTGCGCCCCCGCCCCGGACTGACCTGGTACAACGGCTCCAAGGGC GCCGTCATCACCACCAGCAAATCGATGGCAGCCGAACTCGGCCCCGACAACATCCGCGTGAACTGCATCAACCCCGTGTT CAACCCCGACACCGGCCTGTCCGCCGATTTCGCCGGCGGCCCCGTCGACGAGACCCGCCGCGCCAAGTTCCTGGCCACCA TCCCGCTGGGACGCTTTTCCACCGCACTCGACGTCGCCAACGCCGTGCTCTATCTGGCCAGCGCCGAAGCCGCGTTCATC AGCGGCGTGTGCCTCGAAGTGGACGGGGCACGCTGCGTTTGA
Upstream 100 bases:
>100_bases CCGTTCTACGGCCGTGGCAGCGCAGGGACTGCACCTGCGGCAGCACAACGCCCGGCAGCGCTTGCCGCCGGCAAAACCGG ATAAACCCAAGGAGACCTCC
Downstream 100 bases:
>100_bases TGGCTGTCGTCGGTATTTCGTAATCACTTCGGCCGCCGGAGCCGGGCCACGCCCCGGCCGCAAAGACAGAACGTAAACGA GGACAGAGCACGATGGCACA
Product: 3-ketoacyl-(acyl-carrier-protein) reductase
Products: 3alpha12alpha-dihydroxy-oxobeta-cholanate; NADH [C]
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MRVQNQSIIVTGAGSGIGEGIAKRLAAEGGKVIVNDIDAASGQRVVADITAAGGTASFFQADMTRSAQVEALIDEALRRN GRLDVMVNNAGWTHRNRPLLEVSEDEFDKVYAINVKSIYLSAIHAVPAMRKAGGGSFINIASTAGLRPRPGLTWYNGSKG AVITTSKSMAAELGPDNIRVNCINPVFNPDTGLSADFAGGPVDETRRAKFLATIPLGRFSTALDVANAVLYLASAEAAFI SGVCLEVDGARCV
Sequences:
>Translated_253_residues MRVQNQSIIVTGAGSGIGEGIAKRLAAEGGKVIVNDIDAASGQRVVADITAAGGTASFFQADMTRSAQVEALIDEALRRN GRLDVMVNNAGWTHRNRPLLEVSEDEFDKVYAINVKSIYLSAIHAVPAMRKAGGGSFINIASTAGLRPRPGLTWYNGSKG AVITTSKSMAAELGPDNIRVNCINPVFNPDTGLSADFAGGPVDETRRAKFLATIPLGRFSTALDVANAVLYLASAEAAFI SGVCLEVDGARCV >Mature_253_residues MRVQNQSIIVTGAGSGIGEGIAKRLAAEGGKVIVNDIDAASGQRVVADITAAGGTASFFQADMTRSAQVEALIDEALRRN GRLDVMVNNAGWTHRNRPLLEVSEDEFDKVYAINVKSIYLSAIHAVPAMRKAGGGSFINIASTAGLRPRPGLTWYNGSKG AVITTSKSMAAELGPDNIRVNCINPVFNPDTGLSADFAGGPVDETRRAKFLATIPLGRFSTALDVANAVLYLASAEAAFI SGVCLEVDGARCV
Specific function: 7-Alpha-Dehydroxylation Of Cholic Acid, Yielding Deoxycholic Acid And Lithocholic Acid, Respectively. Highest Affinity With Taurochenodeoxycholic Acid. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=32.2448979591837, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=35.408560311284, Blast_Score=117, Evalue=8e-27, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=34.0659340659341, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=29.6, Blast_Score=104, Evalue=6e-23, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=31.4285714285714, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=31.2757201646091, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=33.0677290836653, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI59889578, Length=223, Percent_Identity=33.6322869955157, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=28.75, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI33667109, Length=181, Percent_Identity=33.1491712707182, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=40.3669724770642, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=28.1124497991968, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI4504505, Length=194, Percent_Identity=28.8659793814433, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI210032110, Length=213, Percent_Identity=26.2910798122066, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI31542939, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI142976729, Length=201, Percent_Identity=26.3681592039801, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=25.0965250965251, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=26.2295081967213, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI302344752, Length=72, Percent_Identity=45.8333333333333, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=29.7142857142857, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI40807363, Length=189, Percent_Identity=25.3968253968254, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=34.5381526104418, Blast_Score=121, Evalue=3e-29, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=33.7349397590361, Blast_Score=120, Evalue=6e-29, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=32.2448979591837, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.1204819277108, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.5555555555556, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=32.6612903225806, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=30.6451612903226, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=27.0916334661355, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=28.740157480315, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=28.125, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1788891, Length=250, Percent_Identity=30.4, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789057, Length=262, Percent_Identity=27.4809160305344, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787820, Length=231, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=33.4677419354839, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=32.7935222672065, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=32.2709163346614, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.4347826086957, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=32.6612903225806, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=32.4, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=31.1023622047244, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=27.8350515463918, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=28.6792452830189, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17508895, Length=168, Percent_Identity=29.1666666666667, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17568967, Length=194, Percent_Identity=31.9587628865979, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=29.3893129770992, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=24.3386243386243, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=27.7566539923954, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=26.3358778625954, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=29.6992481203008, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI193203115, Length=187, Percent_Identity=24.5989304812834, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17508651, Length=236, Percent_Identity=27.9661016949153, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.7709923664122, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=28.1368821292776, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=27.2030651340996, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17531453, Length=257, Percent_Identity=29.1828793774319, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=26.7175572519084, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=25.9541984732824, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=26.3157894736842, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=27.3076923076923, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538182, Length=188, Percent_Identity=31.3829787234043, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=25.7936507936508, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=25.7692307692308, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=25.5639097744361, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=23.9700374531835, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17567345, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=31.2820512820513, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=25.6, Blast_Score=66, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=188, Percent_Identity=26.063829787234, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=38.1889763779528, Blast_Score=147, Evalue=7e-36, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=35.1778656126482, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI23397609, Length=259, Percent_Identity=35.1351351351351, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=32.421875, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=32.4, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=29.7520661157025, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24639444, Length=243, Percent_Identity=29.6296296296296, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI24644337, Length=199, Percent_Identity=36.6834170854271, Blast_Score=94, Evalue=8e-20, Organism=Drosophila melanogaster, GI24640492, Length=224, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI161076933, Length=184, Percent_Identity=29.3478260869565, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI281364892, Length=199, Percent_Identity=31.6582914572864, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24584748, Length=184, Percent_Identity=29.3478260869565, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=29.6577946768061, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24649181, Length=184, Percent_Identity=27.1739130434783, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24584744, Length=186, Percent_Identity=28.494623655914, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI28574402, Length=186, Percent_Identity=28.494623655914, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21355631, Length=214, Percent_Identity=25.2336448598131, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=24.6153846153846, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.159 [C]
Molecular weight: Translated: 26481; Mature: 26481
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVQNQSIIVTGAGSGIGEGIAKRLAAEGGKVIVNDIDAASGQRVVADITAAGGTASFFQ CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHH ADMTRSAQVEALIDEALRRNGRLDVMVNNAGWTHRNRPLLEVSEDEFDKVYAINVKSIYL HHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEHHHHHH SAIHAVPAMRKAGGGSFINIASTAGLRPRPGLTWYNGSKGAVITTSKSMAAELGPDNIRV HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEECHHHHHHCCCCCEEE NCINPVFNPDTGLSADFAGGPVDETRRAKFLATIPLGRFSTALDVANAVLYLASAEAAFI EEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHEEEECCCHHHH SGVCLEVDGARCV EEEEEEECCCCCC >Mature Secondary Structure MRVQNQSIIVTGAGSGIGEGIAKRLAAEGGKVIVNDIDAASGQRVVADITAAGGTASFFQ CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHH ADMTRSAQVEALIDEALRRNGRLDVMVNNAGWTHRNRPLLEVSEDEFDKVYAINVKSIYL HHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEHHHHHH SAIHAVPAMRKAGGGSFINIASTAGLRPRPGLTWYNGSKGAVITTSKSMAAELGPDNIRV HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEECHHHHHHCCCCCEEE NCINPVFNPDTGLSADFAGGPVDETRRAKFLATIPLGRFSTALDVANAVLYLASAEAAFI EEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHEEEECCCHHHH SGVCLEVDGARCV EEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: 2-Mercaptoethanol; Dithiothreitol; NAD+; NADH [C]
Metal ions: CaCl2; KCl; MnCl2; NaCl [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.8 {cholic} 0.085 {glycochenodeoxycholic} 0.24 {taurochenodeoxycholic} 1 {glycocholic} 0.06 {chenodeoxycholic} [C]
Substrates: @ALPH01.txt*3alpha7alpha12alpha-Trihydroxybeta-cholanate!; NAD [C]
Specific reaction: @ALPH01.txt*3alpha7alpha12alpha-Trihydroxybeta-cholanate! + NAD+ = 3alpha12alpha-dihydroxy-oxobeta-cholanate + NADH [C]
General reaction: Redox reaction [C]
Inhibitor: Ascorbicacid; BaCl2; CoCl2; CuCl2; EDTA; FeCl3; HgCl2; MgCl2; NH4Cl; Potassiumoxalate; Sodiumcitrate; Sodiumlaurylsulfate; Sodiumperchlorate; Sodiumperiodate; Sodiumpersulfate; TritonX-100; Tween; ZnCl2 [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]