| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121609888
Identifier: 121609888
GI number: 121609888
Start: 3291700
End: 3292602
Strand: Direct
Name: 121609888
Synonym: Veis_2941
Alternate gene names: NA
Gene position: 3291700-3292602 (Clockwise)
Preceding gene: 121609887
Following gene: 121609893
Centisome position: 59.13
GC content: 67.55
Gene sequence:
>903_bases ATGGCCCAGGACTACCCGGTGCGCCCGGTCCGCATCGTGTCGGTGACCAGCGCCGGCTCCGGCGTCGATGGCTTTTCACG CCTGATGGCCAGCTACCTCGGCGAGCGGCTCGGGCAGGGTGTCTTCATCGAGAACAGGCCGGGCGCCAACTCCATTCTGG CCTGCGATTACGTCGCCAAGGCCGCGCCCGACGGCTATACCTTGCTCCTCGCATCGGCCAGCGCGCTGGCCGCCAATCCG TATCTTTTCAAGAACCTGCCGTACAACGCCAACGAGGACTTCGCTCCGATCGCGCGCTTGAGCGCGCTGCCGGTCACCAT CGTCGTGCCGGCCACCTCGCCGTACCGCAGCCTGGCCGACCTGGCAGACGCGGCGCACGACAGGCCCGGCAAGCTCAACT TCGGCACCAGCACCACGGGCTACCGCACGATGCTCGGCGCCATCAACGGCGCTGCCAGGATCGACGCCGTCGATGTGCCC TACAAGGGGACAAGCAACCTGCTGCCCGACCTGGTTGGCGGCACCATCGACTACGGCATCCTCGAAGTCTCGACCGCAGT GCCGCTGGTGCGGGCGAACAAGCTGCGCGCGCTCGTGGTGACCAGCCCGGCCCGTGTGGCGACCCTGGAAGATGTGCCGA CGCTGGCCGAAGCGGGCCTCGGAGAGGCCACCTTGGTGAGTTGGGTCGGCCTGTTCGCACCGGCCGGCACCCCGCAGCCG GTCATCGACAAGCTGTCGATGCTGGCGCTCGAATTTGTCCAGACGCCCGAAGCCGCAGCGCACTTCGCACAGCTCGGCAC CATCGCCTATCCGGCCGGCGCGAGCGAGTTCGCCAAAGCCATCGTCGAAGACCAGGCCCAATGGAAGCGCTACATCACTG CGGCCGGTATCCAGGCCGAGTGA
Upstream 100 bases:
>100_bases TCGCCTTCGGGCGCGTCGTCCCTTTGTTGCCCTTGCCTTTGCCTTTGCCACCGCCTCTGCCGCCCTTGGCGGCCTCCTCG CGCTGGCGCACACGCAGGCC
Downstream 100 bases:
>100_bases GCGGGCAGTTCGTTCGCAGGCGCGCAGATCGGCGCCCGCCAGGTCTTTCCCGACGAGGGTTTCAGGGAGCCGCCGTCAGC GCAATCGCCAGCCGCGTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MAQDYPVRPVRIVSVTSAGSGVDGFSRLMASYLGERLGQGVFIENRPGANSILACDYVAKAAPDGYTLLLASASALAANP YLFKNLPYNANEDFAPIARLSALPVTIVVPATSPYRSLADLADAAHDRPGKLNFGTSTTGYRTMLGAINGAARIDAVDVP YKGTSNLLPDLVGGTIDYGILEVSTAVPLVRANKLRALVVTSPARVATLEDVPTLAEAGLGEATLVSWVGLFAPAGTPQP VIDKLSMLALEFVQTPEAAAHFAQLGTIAYPAGASEFAKAIVEDQAQWKRYITAAGIQAE
Sequences:
>Translated_300_residues MAQDYPVRPVRIVSVTSAGSGVDGFSRLMASYLGERLGQGVFIENRPGANSILACDYVAKAAPDGYTLLLASASALAANP YLFKNLPYNANEDFAPIARLSALPVTIVVPATSPYRSLADLADAAHDRPGKLNFGTSTTGYRTMLGAINGAARIDAVDVP YKGTSNLLPDLVGGTIDYGILEVSTAVPLVRANKLRALVVTSPARVATLEDVPTLAEAGLGEATLVSWVGLFAPAGTPQP VIDKLSMLALEFVQTPEAAAHFAQLGTIAYPAGASEFAKAIVEDQAQWKRYITAAGIQAE >Mature_299_residues AQDYPVRPVRIVSVTSAGSGVDGFSRLMASYLGERLGQGVFIENRPGANSILACDYVAKAAPDGYTLLLASASALAANPY LFKNLPYNANEDFAPIARLSALPVTIVVPATSPYRSLADLADAAHDRPGKLNFGTSTTGYRTMLGAINGAARIDAVDVPY KGTSNLLPDLVGGTIDYGILEVSTAVPLVRANKLRALVVTSPARVATLEDVPTLAEAGLGEATLVSWVGLFAPAGTPQPV IDKLSMLALEFVQTPEAAAHFAQLGTIAYPAGASEFAKAIVEDQAQWKRYITAAGIQAE
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 31364; Mature: 31233
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQDYPVRPVRIVSVTSAGSGVDGFSRLMASYLGERLGQGVFIENRPGANSILACDYVAK CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHH AAPDGYTLLLASASALAANPYLFKNLPYNANEDFAPIARLSALPVTIVVPATSPYRSLAD CCCCCEEEEEECCHHHHCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHH LADAAHDRPGKLNFGTSTTGYRTMLGAINGAARIDAVDVPYKGTSNLLPDLVGGTIDYGI HHHHHCCCCCCEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCHHHHH LEVSTAVPLVRANKLRALVVTSPARVATLEDVPTLAEAGLGEATLVSWVGLFAPAGTPQP EEHHHHCCCEECCCEEEEEEECCCCEEEHHHCCHHHHCCCCHHHHHHHHHHHCCCCCCHH VIDKLSMLALEFVQTPEAAAHFAQLGTIAYPAGASEFAKAIVEDQAQWKRYITAAGIQAE HHHHHHHHHHHHHHCCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure AQDYPVRPVRIVSVTSAGSGVDGFSRLMASYLGERLGQGVFIENRPGANSILACDYVAK CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHH AAPDGYTLLLASASALAANPYLFKNLPYNANEDFAPIARLSALPVTIVVPATSPYRSLAD CCCCCEEEEEECCHHHHCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCHHHHHH LADAAHDRPGKLNFGTSTTGYRTMLGAINGAARIDAVDVPYKGTSNLLPDLVGGTIDYGI HHHHHCCCCCCEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCHHHHH LEVSTAVPLVRANKLRALVVTSPARVATLEDVPTLAEAGLGEATLVSWVGLFAPAGTPQP EEHHHHCCCEECCCEEEEEEECCCCEEEHHHCCHHHHCCCCHHHHHHHHHHHCCCCCCHH VIDKLSMLALEFVQTPEAAAHFAQLGTIAYPAGASEFAKAIVEDQAQWKRYITAAGIQAE HHHHHHHHHHHHHHCCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]