Click here to switch to the map view.

The map label for this gene is fliF [H]

Identifier: 120613031

GI number: 120613031

Start: 4885191

End: 4886891

Strand: Reverse

Name: fliF [H]

Synonym: Aave_4395

Alternate gene names: 120613031

Gene position: 4886891-4885191 (Counterclockwise)

Preceding gene: 120613033

Following gene: 120613030

Centisome position: 91.3

GC content: 68.02

Gene sequence:

>1701_bases
ATGTCCGCAGTCGCCGAAATCCCCGTCGCTCCCCCTGCCAGCTCCAGCGCGCCGTCCGTGCTTCAGCGTTTTTCCGCGCT
GGACCGTTCCAAGCGGCTGCGCTTCGGCGCGGGCATCGCGCTGCTGGTGGCCGCGGTGGTCGCCGCGGTGGTGCTCAACC
GGCAGCCGGACTACAAGGTGCTGTTCTCCAATCTGAGCGACAAGGATGGCGGCGCCATCGTGGCCCAGTTGTCCACGATG
AATGTCCCCTACAAGTATTCGGAGGGCGGGGGCGCCATCCTGGTGCCGGCCGAGCGCGTGCACGACGTCCGCCTGCGCCT
GGCCACCCAGGGCCTGCCCAAGGGCTCGGTGACCGGGTTCGAGCTCATGGAGACCAACCGCTTCGGCGTGACGCAATTCC
AGGAGCGCCTGAACTTCCAGCGCGGGCTCGAGGGCGAACTGACGCGCTCCATCCAGGCGCTGTCGTCCGTGCAGAGCGCA
CGCGTCCATCTGGCGCTGCCCAACCAGAACGGATTTTTCCGCGAACAGCAGAAGCCTTCCGCTTCCGTGCTGCTGAGCCT
GTACCCCGGCCGCTTCCTCGATCGCACCCAACTGGCCGGCATCGTGCATCTGGTGGCTTCCAGCGTGCCCGAGATGTCGC
CTTCCGCCGTCAGCGTGCTCGACGATACCGGCAAGCTGCTGTCGCAATCGCCCGATACGGCCGCCGGCAGCGCCATCGAT
GCCCAGCAGCTGTCCTACGTGCAGCAGATCGAGCAGCAATACACCCGCCGCATCCTGGACATCCTGGAGCCCGTGGTCGG
CAAGAACAACGTCAAGGCCCAGGTGACGGCCGAGGTGGATTTCTCGCAATCGGAGCAGACGTCCGAGCAGCACCGTCCCA
ACCAGACGCCCGACAGCAGTGCAGTGCGCAGCCAGCAGGTGGTGGAAAGCTCCGGCGGCACCCAGGGCAACCAGCCCCCG
GCCGGCGTTCCGGGCGCCGCCAGCAACCAGCCGCCCCAGCCGTCCACCGCCCCCATCAACGGCGCCAATCCCGCGCCCAC
GGCAGGCAACGGCCAGCAGGGCCAGGCGGCCGGGTCCAAGCGTGAATCCATCACCAACTACGAGGTGGACAAGACGGTGC
GCGTTACCCGGGCCGGCAGCGGCGCGATCAAGCGCGTCAGCGCCGCCGTGGTGGTGAACTACCAGGCCATCGCGGATGCG
GCGGGGAAGGCGCCCCAGGCCAAGGCCTTCACGCCCGAGCAGATCGAGCAGATGACGGCCCTGGTTCGCGAAACCATCGG
GTACAGCAAGGATCGCGGCGACTCGGTGAACATCATGAACACCCAGTTCCTGGTGGACAACACGCCGGCGGTCGAGCTGC
CGCTCTGGAAGCAGCCCGAGATGATCGAGCTGGCCAAGAGCCTGGGCTGGCCGGTGGGCATGTCGCTCTTCGCCGCGCTC
ATCCTCCTCGGGCTGGTGCGTCCGGCGATCAAGGGCATGAACCAGCCGCCCGCGCCCGCCGCGGCGCCGGCATCGGGCCG
CCAGGTGGATGCGATCGAGGCCGACGAGCCCGAGCGCCCGGCCCTGGCCGCCCCCGCCAAGCCCGAAGACCTGATCCAGA
CCCCCGAACAGATGCGCCTGGAGGAAGCGCGTGTCCTGGCCAAGGAAAATCCCGTGGCCGTCGCCAACATTCTCAAGGTG
TGGGTAAACGGCGAATCTTGA

Upstream 100 bases:

>100_bases
GAAAACGGGCGCCTTATCCGGCCGCCGGGCAGGGGGGCGGCGGCCAATAATCGCGGCACGCCAGATCCCGTGTGCCGTGG
CGGTCCCCTTGGAAAGCACC

Downstream 100 bases:

>100_bases
AACGCGGCCGCCATCCGTCGATGATGGCGCCGATGAGCACTCCCACCCACCCCTTCCCCTACCGACCGGTGACTTTCCAT
GGATGAGCAAGGCCTGAACG

Product: flagellar M-ring protein FliF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 565

Protein sequence:

>566_residues
MSAVAEIPVAPPASSSAPSVLQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM
NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSVTGFELMETNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSA
RVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAID
AQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQGNQPP
AGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIADA
AGKAPQAKAFTPEQIEQMTALVRETIGYSKDRGDSVNIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAAL
ILLGLVRPAIKGMNQPPAPAAAPASGRQVDAIEADEPERPALAAPAKPEDLIQTPEQMRLEEARVLAKENPVAVANILKV
WVNGES

Sequences:

>Translated_566_residues
MSAVAEIPVAPPASSSAPSVLQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM
NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSVTGFELMETNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSA
RVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAID
AQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQGNQPP
AGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIADA
AGKAPQAKAFTPEQIEQMTALVRETIGYSKDRGDSVNIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAAL
ILLGLVRPAIKGMNQPPAPAAAPASGRQVDAIEADEPERPALAAPAKPEDLIQTPEQMRLEEARVLAKENPVAVANILKV
WVNGES
>Mature_565_residues
SAVAEIPVAPPASSSAPSVLQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTMN
VPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSVTGFELMETNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSAR
VHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAIDA
QQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQGNQPPA
GVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIADAA
GKAPQAKAFTPEQIEQMTALVRETIGYSKDRGDSVNIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALI
LLGLVRPAIKGMNQPPAPAAAPASGRQVDAIEADEPERPALAAPAKPEDLIQTPEQMRLEEARVLAKENPVAVANILKVW
VNGES

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=560, Percent_Identity=41.25, Blast_Score=394, Evalue=1e-111,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 60126; Mature: 59994

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVAEIPVAPPASSSAPSVLQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
LFSNLSDKDGGAIVAQLSTMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSVTGF
HCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCE
ELMETNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPS
EEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCC
ASVLLSLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAID
HHEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
AQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCHH
AVRSQQVVESSGGTQGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSK
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
RESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIADAAGKAPQAKAFTPEQIEQMTA
HHHCCCCCCCCEEEEEECCCCHHHHHHHHHEEEHHHHHHHCCCCCCCCCCCHHHHHHHHH
LVRETIGYSKDRGDSVNIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAAL
HHHHHHCCCCCCCCEEEEEEEEEEECCCCCEECCCCCCCHHHHHHHHCCCCHHHHHHHHH
ILLGLVRPAIKGMNQPPAPAAAPASGRQVDAIEADEPERPALAAPAKPEDLIQTPEQMRL
HHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
EEARVLAKENPVAVANILKVWVNGES
HHHHHHHCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAVAEIPVAPPASSSAPSVLQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
LFSNLSDKDGGAIVAQLSTMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPKGSVTGF
HCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCE
ELMETNRFGVTQFQERLNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPS
EEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCC
ASVLLSLYPGRFLDRTQLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAID
HHEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
AQQLSYVQQIEQQYTRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCHH
AVRSQQVVESSGGTQGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSK
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
RESITNYEVDKTVRVTRAGSGAIKRVSAAVVVNYQAIADAAGKAPQAKAFTPEQIEQMTA
HHHCCCCCCCCEEEEEECCCCHHHHHHHHHEEEHHHHHHHCCCCCCCCCCCHHHHHHHHH
LVRETIGYSKDRGDSVNIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAAL
HHHHHHCCCCCCCCEEEEEEEEEEECCCCCEECCCCCCCHHHHHHHHCCCCHHHHHHHHH
ILLGLVRPAIKGMNQPPAPAAAPASGRQVDAIEADEPERPALAAPAKPEDLIQTPEQMRL
HHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
EEARVLAKENPVAVANILKVWVNGES
HHHHHHHCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 1551848; 8224881 [H]