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The map label for this gene is fliR [H]

Identifier: 120613019

GI number: 120613019

Start: 4875558

End: 4876301

Strand: Reverse

Name: fliR [H]

Synonym: Aave_4383

Alternate gene names: 120613019

Gene position: 4876301-4875558 (Counterclockwise)

Preceding gene: 120613020

Following gene: 120613016

Centisome position: 91.1

GC content: 67.07

Gene sequence:

>744_bases
ATGGCCTGGCTCTCGCCGGTGCTGTGGCCGTTCCTGCGGGTCCTGGCCGTCTTCATGGTCGCGCCGGTGTTCTCCATGCG
CAGCATCCCCGTCCGGGCCAAGGTCGGGCTGGCCTTCCTGGTGGCCGTGTGCGCGCAGGCCGTGCTGCCCGACCAGCCCG
TCGTCAGCGTCAACGGCCGCGAAGCGCTCGGCGCGGTCGCCCAGCAGGTGGCGGTCGGCATGTCGGTCGGCTTCGCCGTA
CGGCTGGTATTCACCGCGGTCGAGCTGGCGGGCGAGGTCGTCGGCCTGCAGATGGGGCTCAACTTCGCGTCCTTCTTCGA
TCCCTCCACGAGCGGGCAGGTCAGCGCGGTGGGCCGCTTCTTCGGCCACATGGCCATGCTGCTCTTCGTGGTCATCAACG
GCCACCTCATGGTGCTCATGGCCGTGGTGAAGAGCTTCGACAGCTTTCCGGTGGACGGCAATTTCCTGCAGTCGATCGGC
CAGATGCGCCTGCACGAACTCGGCGCGTCGCTGTTCTCCAGTGCGCTCTGGATCGCCCTGCCCATGATCGCGCTGCTGAT
GTTCGTCAACCTGGCCCTCGGCGTGATCTCCCGGGTGGCGCCGCAGATGAACATCTATGCGGTGGGGTTTCCGGTGACCC
TGACGGTCGGGCTGTTGGGGATCGCCGCCACGCTGCCCATGCTCGAGCAACCGGTGCTCACCCTCATGCAGCAATCCATC
GACCTCTTCGCCTCGCAGCGGTAA

Upstream 100 bases:

>100_bases
ATGATCACCTCGCTGGTGGACTACATCCGGCGCACCATCGAATCCATTCCCTCCGTCGTCACCTGAGCGCCGCGTGATCA
CCTTCTCCGAGGCGCAGATC

Downstream 100 bases:

>100_bases
CCGGACGGCGGGGCGTCACACCAGCTGGTTGCGGATGGCGTACACCGTCAGTTCGGCGTTGTTGCTGAGCTTGAGCTTCT
CCAGCACGCGCGAGCGGTAC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MAWLSPVLWPFLRVLAVFMVAPVFSMRSIPVRAKVGLAFLVAVCAQAVLPDQPVVSVNGREALGAVAQQVAVGMSVGFAV
RLVFTAVELAGEVVGLQMGLNFASFFDPSTSGQVSAVGRFFGHMAMLLFVVINGHLMVLMAVVKSFDSFPVDGNFLQSIG
QMRLHELGASLFSSALWIALPMIALLMFVNLALGVISRVAPQMNIYAVGFPVTLTVGLLGIAATLPMLEQPVLTLMQQSI
DLFASQR

Sequences:

>Translated_247_residues
MAWLSPVLWPFLRVLAVFMVAPVFSMRSIPVRAKVGLAFLVAVCAQAVLPDQPVVSVNGREALGAVAQQVAVGMSVGFAV
RLVFTAVELAGEVVGLQMGLNFASFFDPSTSGQVSAVGRFFGHMAMLLFVVINGHLMVLMAVVKSFDSFPVDGNFLQSIG
QMRLHELGASLFSSALWIALPMIALLMFVNLALGVISRVAPQMNIYAVGFPVTLTVGLLGIAATLPMLEQPVLTLMQQSI
DLFASQR
>Mature_246_residues
AWLSPVLWPFLRVLAVFMVAPVFSMRSIPVRAKVGLAFLVAVCAQAVLPDQPVVSVNGREALGAVAQQVAVGMSVGFAVR
LVFTAVELAGEVVGLQMGLNFASFFDPSTSGQVSAVGRFFGHMAMLLFVVINGHLMVLMAVVKSFDSFPVDGNFLQSIGQ
MRLHELGASLFSSALWIALPMIALLMFVNLALGVISRVAPQMNIYAVGFPVTLTVGLLGIAATLPMLEQPVLTLMQQSID
LFASQR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=247, Percent_Identity=40.080971659919, Blast_Score=154, Evalue=6e-39,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 26368; Mature: 26237

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCC
>Mature Secondary Structure 
AWLSPVLWPFLRVLAVFMVAPVFSMRSIPVRAKVGLAFLVAVCAQAVLPDQPVVSVNGR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCH
EALGAVAQQVAVGMSVGFAVRLVFTAVELAGEVVGLQMGLNFASFFDPSTSGQVSAVGRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHH
FGHMAMLLFVVINGHLMVLMAVVKSFDSFPVDGNFLQSIGQMRLHELGASLFSSALWIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
PMIALLMFVNLALGVISRVAPQMNIYAVGFPVTLTVGLLGIAATLPMLEQPVLTLMQQSI
HHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLFASQR
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]