Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yjiX [H]
Identifier: 120612863
GI number: 120612863
Start: 4683498
End: 4683779
Strand: Reverse
Name: yjiX [H]
Synonym: Aave_4227
Alternate gene names: 120612863
Gene position: 4683779-4683498 (Counterclockwise)
Preceding gene: 120612864
Following gene: 120612860
Centisome position: 87.5
GC content: 75.53
Gene sequence:
>282_bases GTGAGTCCGGCGGCCGACGGCAGCGGGAACGGAAGCGGCGCCCGCAGCGCCGCGGGCCGGCCGCTGCAGGCAGCGCGCGA CGCCGTGCAGGCCGTCGCCACGGGCGGGCGTTACCTGGCGCAGTCGCTGCGCCTCATGGTGGGCCTGCCCGACTACGACG CCTACCTGACCCACCGCGAGCGCACGCATCCCGGCGAGCCGGTCATGAGCTATGCCGAGTTCTTCCGGGAGCGGCAGGAC GCGCGCTACGGCGGCAACGGGCGCATCGGCCGCTGCTGCTGA
Upstream 100 bases:
>100_bases GCGTGCTGGTCTATAGCGTGCGCGCCTGCCTGCAGGCCCGCGCCGCGAACCGTCCCACGGCGCAGGAGACCCCGTTCGAG GCCCTGCCGGAGGGCGCGCG
Downstream 100 bases:
>100_bases AGGTCAGGCCGCCGGGTTCACCATTCCCCGCATTCCATCCTTATCGCCACCTCGCAGTCGTCGAAGATTTCGAGCTTGGC GATCTTCACGCGCACGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 93; Mature: 92
Protein sequence:
>93_residues MSPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRERTHPGEPVMSYAEFFRERQD ARYGGNGRIGRCC
Sequences:
>Translated_93_residues MSPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRERTHPGEPVMSYAEFFRERQD ARYGGNGRIGRCC >Mature_92_residues SPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRERTHPGEPVMSYAEFFRERQDA RYGGNGRIGRCC
Specific function: Unknown
COG id: COG2879
COG function: function code S; Uncharacterized small protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ybdD [H]
Homologues:
Organism=Escherichia coli, GI1790813, Length=58, Percent_Identity=56.8965517241379, Blast_Score=80, Evalue=2e-17, Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=53.8461538461538, Blast_Score=80, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007423 [H]
Pfam domain/function: PF04328 DUF466 [H]
EC number: NA
Molecular weight: Translated: 9946; Mature: 9815
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHCCC RTHPGEPVMSYAEFFRERQDARYGGNGRIGRCC CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHCCC RTHPGEPVMSYAEFFRERQDARYGGNGRIGRCC CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]