Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is yjiX [H]

Identifier: 120612863

GI number: 120612863

Start: 4683498

End: 4683779

Strand: Reverse

Name: yjiX [H]

Synonym: Aave_4227

Alternate gene names: 120612863

Gene position: 4683779-4683498 (Counterclockwise)

Preceding gene: 120612864

Following gene: 120612860

Centisome position: 87.5

GC content: 75.53

Gene sequence:

>282_bases
GTGAGTCCGGCGGCCGACGGCAGCGGGAACGGAAGCGGCGCCCGCAGCGCCGCGGGCCGGCCGCTGCAGGCAGCGCGCGA
CGCCGTGCAGGCCGTCGCCACGGGCGGGCGTTACCTGGCGCAGTCGCTGCGCCTCATGGTGGGCCTGCCCGACTACGACG
CCTACCTGACCCACCGCGAGCGCACGCATCCCGGCGAGCCGGTCATGAGCTATGCCGAGTTCTTCCGGGAGCGGCAGGAC
GCGCGCTACGGCGGCAACGGGCGCATCGGCCGCTGCTGCTGA

Upstream 100 bases:

>100_bases
GCGTGCTGGTCTATAGCGTGCGCGCCTGCCTGCAGGCCCGCGCCGCGAACCGTCCCACGGCGCAGGAGACCCCGTTCGAG
GCCCTGCCGGAGGGCGCGCG

Downstream 100 bases:

>100_bases
AGGTCAGGCCGCCGGGTTCACCATTCCCCGCATTCCATCCTTATCGCCACCTCGCAGTCGTCGAAGATTTCGAGCTTGGC
GATCTTCACGCGCACGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MSPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRERTHPGEPVMSYAEFFRERQD
ARYGGNGRIGRCC

Sequences:

>Translated_93_residues
MSPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRERTHPGEPVMSYAEFFRERQD
ARYGGNGRIGRCC
>Mature_92_residues
SPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRERTHPGEPVMSYAEFFRERQDA
RYGGNGRIGRCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybdD [H]

Homologues:

Organism=Escherichia coli, GI1790813, Length=58, Percent_Identity=56.8965517241379, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=53.8461538461538, Blast_Score=80, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 9946; Mature: 9815

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHCCC
RTHPGEPVMSYAEFFRERQDARYGGNGRIGRCC
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SPAADGSGNGSGARSAAGRPLQAARDAVQAVATGGRYLAQSLRLMVGLPDYDAYLTHRE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHCCC
RTHPGEPVMSYAEFFRERQDARYGGNGRIGRCC
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]