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The map label for this gene is rbsB [H]

Identifier: 120612832

GI number: 120612832

Start: 4649748

End: 4650704

Strand: Direct

Name: rbsB [H]

Synonym: Aave_4196

Alternate gene names: 120612832

Gene position: 4649748-4650704 (Clockwise)

Preceding gene: 120612831

Following gene: 120612833

Centisome position: 86.87

GC content: 67.19

Gene sequence:

>957_bases
ATGACCCTGAACCGCCGCACCCTCCAGACCGCCGCCGTCCTGGCCCTCGCCGGTGGCCTGTTCGCGCAGCCTGCCTTCGC
GCAGGACAAGCCCAAGGTCGCGCTGGTGATGAAGTCGCTCGCCAACGAGTTCTTCCGCACCATGGAGGACGGGGCCAAGG
CGCACCAGAAGGCGCATGCCTCGGAATACACGCTGGTGGCCAACGGCATCAAGAACGAGACCGACACTGCCGCGCAGATC
AAGATGATCGAGCAGGCCGTGGCACAGAAGGTGAACGCCATCGTGCTCGCGCCCGCCGATTCCAAGGCCCTGGTGCCGGC
CGTGAAGGCCGCGGTGGACAAGGGCATCCTCGTGGTCAACATCGACAACCGCCTGGATGCCAACGCGCTCAAGGAAAAGA
GCCTGAACGTGCCCTTCGTCGGCCCGGACAACCGTGCCGGCGCCAAGCTGGTGGGCGACTACCTGGCCAAGCAGCTGAAG
GCCGGCGACAAGGTCGGCATCATCGAGGGCGTTTCCACCACGTTCAACGCGCAGCAGCGCACGCTGGGCTTCCAGGACGC
GATGAAGGCCGCCAACATCAACGTGGTCGGCGTGCAGTCCGGCCAGTGGGAAATCGAGAAGGGCAACACCGTGGCCGCCG
GCATGCTGCGCGAGCACCCGGACCTGGTGGCGCTGCTGGCTGGCAACGACAGCATGGCGCTGGGCGCCGTGGCCGCTGTG
AGGGCCGCCGGCAAGGCCGGCAAGGTGCAGGTGGTGGGCTACGACAACATCAACGCCATCAAGCCCATGCTGGCCGACGG
CCGCGTGCTGGCCACGGCCGACCAGTACGCCGCCAAGCAGGCGGTGTTCGGCATCGAGATGGCGCTGAAGGCCCTCGCCG
CCAAGACGCCGCAGGCCCAGCTGCCAGCCGAGGTCAAGACCGAAGTGGTGCTGGTGACCAAGGGCACCGGCAAGTAA

Upstream 100 bases:

>100_bases
TTTCTTTCGCTACCATAGCACCCCCGCAGGATCCCCTGCCGCGAACGGCGGCAGGCCTGCGCCCGACTATTCTCTTTCCG
CCCACAACCAGGAGACTTCC

Downstream 100 bases:

>100_bases
CGCAGCGGCGGCGCGCGAGGGCAGGAGGCGCTGCAGGGCGCCGCGTTCACCTTCCGCGCACCGCATGGCCGACGCCGCGC
GCAACCCGCGCGGCATTCCT

Product: periplasmic-binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTLNRRTLQTAAVLALAGGLFAQPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKAHASEYTLVANGIKNETDTAAQI
KMIEQAVAQKVNAIVLAPADSKALVPAVKAAVDKGILVVNIDNRLDANALKEKSLNVPFVGPDNRAGAKLVGDYLAKQLK
AGDKVGIIEGVSTTFNAQQRTLGFQDAMKAANINVVGVQSGQWEIEKGNTVAAGMLREHPDLVALLAGNDSMALGAVAAV
RAAGKAGKVQVVGYDNINAIKPMLADGRVLATADQYAAKQAVFGIEMALKALAAKTPQAQLPAEVKTEVVLVTKGTGK

Sequences:

>Translated_318_residues
MTLNRRTLQTAAVLALAGGLFAQPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKAHASEYTLVANGIKNETDTAAQI
KMIEQAVAQKVNAIVLAPADSKALVPAVKAAVDKGILVVNIDNRLDANALKEKSLNVPFVGPDNRAGAKLVGDYLAKQLK
AGDKVGIIEGVSTTFNAQQRTLGFQDAMKAANINVVGVQSGQWEIEKGNTVAAGMLREHPDLVALLAGNDSMALGAVAAV
RAAGKAGKVQVVGYDNINAIKPMLADGRVLATADQYAAKQAVFGIEMALKALAAKTPQAQLPAEVKTEVVLVTKGTGK
>Mature_317_residues
TLNRRTLQTAAVLALAGGLFAQPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKAHASEYTLVANGIKNETDTAAQIK
MIEQAVAQKVNAIVLAPADSKALVPAVKAAVDKGILVVNIDNRLDANALKEKSLNVPFVGPDNRAGAKLVGDYLAKQLKA
GDKVGIIEGVSTTFNAQQRTLGFQDAMKAANINVVGVQSGQWEIEKGNTVAAGMLREHPDLVALLAGNDSMALGAVAAVR
AAGKAGKVQVVGYDNINAIKPMLADGRVLATADQYAAKQAVFGIEMALKALAAKTPQAQLPAEVKTEVVLVTKGTGK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=277, Percent_Identity=33.2129963898917, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790526, Length=282, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1790674, Length=204, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33230; Mature: 33099

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNRRTLQTAAVLALAGGLFAQPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKAHA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SEYTLVANGIKNETDTAAQIKMIEQAVAQKVNAIVLAPADSKALVPAVKAAVDKGILVVN
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCEEEEE
IDNRLDANALKEKSLNVPFVGPDNRAGAKLVGDYLAKQLKAGDKVGIIEGVSTTFNAQQR
ECCCCCHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
TLGFQDAMKAANINVVGVQSGQWEIEKGNTVAAGMLREHPDLVALLAGNDSMALGAVAAV
HCCHHHHHHHCCCEEEEECCCCEEEECCCEEEEHHHHCCCCEEEEEECCCCHHHHHHHHH
RAAGKAGKVQVVGYDNINAIKPMLADGRVLATADQYAAKQAVFGIEMALKALAAKTPQAQ
HHCCCCCEEEEEECCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LPAEVKTEVVLVTKGTGK
CCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
TLNRRTLQTAAVLALAGGLFAQPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKAHA
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SEYTLVANGIKNETDTAAQIKMIEQAVAQKVNAIVLAPADSKALVPAVKAAVDKGILVVN
CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCEEEEE
IDNRLDANALKEKSLNVPFVGPDNRAGAKLVGDYLAKQLKAGDKVGIIEGVSTTFNAQQR
ECCCCCHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
TLGFQDAMKAANINVVGVQSGQWEIEKGNTVAAGMLREHPDLVALLAGNDSMALGAVAAV
HCCHHHHHHHCCCEEEEECCCCEEEECCCEEEEHHHHCCCCEEEEEECCCCHHHHHHHHH
RAAGKAGKVQVVGYDNINAIKPMLADGRVLATADQYAAKQAVFGIEMALKALAAKTPQAQ
HHCCCCCEEEEEECCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
LPAEVKTEVVLVTKGTGK
CCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]