Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is corC [H]
Identifier: 120612822
GI number: 120612822
Start: 4637889
End: 4638773
Strand: Reverse
Name: corC [H]
Synonym: Aave_4185
Alternate gene names: 120612822
Gene position: 4638773-4637889 (Counterclockwise)
Preceding gene: 120612823
Following gene: 120612821
Centisome position: 86.66
GC content: 68.36
Gene sequence:
>885_bases GTGTCCGACCCCCACCCTGCGCGCCCCTCCGACCGCGAAGACAAGCGCACGTTCCTGCAGCGCCTCATCGAATTCATCCA TCCCGGCCCCGATTCCAAGGATGAACTGATCGCCACCCTGGCCGAGGCGGAGGACAACGACGTCATCAATGCCGATGCGC GCGTGATGCTCGAACGCGTCCTGCGCATGGCCGAGATGACGGCCAGCGACGTGATGGTGCCTGCGCCGCGCATGGACCTG ATCGACATCGACCAGCCGTTCGAGGCGCTGCTGCACCAGGTGATCGATACCGCCCATTCGCGGTTCCCGGTGTACCAGGG GGAGCGCGAGAACATCATCGGCATCCTCATGGCGAAGGACCTGCTCAAGCTGCAGCGGGCGCCCGAGCTGAACCTCCGGG CGTTGCTGCGCTCCGTGGTGTACGTGCCCGAGAGCAAGGGGCTGAACGACCTGCTGCGCGAGTTCCGCGCCAACCGCATC CACATGGCGGTGGTGATCGACGAGTTCGGCCGGGTGGCCGGGCTGGTCACCATCGAGGACGTGCTCGAGCAGATCGTGGG CGAGATCGAGGACGAATTCGACATCCCCGAGGACGAGGGCGACATCTTCGCCCTGGCGGACCGGACCTACCGCGTGAGCG GCGACACGCCCGTGGAGCGCGTGGCCGAGGCCTTCGACCTGCCCGCCCTCGAAGGCTCCGACAAGGACGAGGAGTTCGAG ACCATCGGCGGCCTGATCGCGCACGAGCTGGGCCATGCGCCGCGCCGCGGGGAATCGCTGGACCTCGGCGGCCTGCGCTT CGTCGTGCTGCACACCAAGGGCGGCGCGGTGCGCTGGTTCAAGGTGTCGCCGCAGCCCCCGGGCGCCGAACCGGACGCCG GCTGA
Upstream 100 bases:
>100_bases GGGTATGAGGGCCGGTCCGCGGCACGCCAGCGGGGAGTGTCGCGGGCATCCGCTATCCTTGGAGGCCTGACAACCACCGC ACGTCCTGCACACCGAGACC
Downstream 100 bases:
>100_bases CCATGCTCCTGCAAGCCTATGGCAACGGGCGCCCGCGCGCGCCCGCGGCGCTCCTGTTGACGGCAGCCGTGCTGGCCGGG CTGGCGCAGGCGGCTTCCAT
Product: CBS domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MSDPHPARPSDREDKRTFLQRLIEFIHPGPDSKDELIATLAEAEDNDVINADARVMLERVLRMAEMTASDVMVPAPRMDL IDIDQPFEALLHQVIDTAHSRFPVYQGERENIIGILMAKDLLKLQRAPELNLRALLRSVVYVPESKGLNDLLREFRANRI HMAVVIDEFGRVAGLVTIEDVLEQIVGEIEDEFDIPEDEGDIFALADRTYRVSGDTPVERVAEAFDLPALEGSDKDEEFE TIGGLIAHELGHAPRRGESLDLGGLRFVVLHTKGGAVRWFKVSPQPPGAEPDAG
Sequences:
>Translated_294_residues MSDPHPARPSDREDKRTFLQRLIEFIHPGPDSKDELIATLAEAEDNDVINADARVMLERVLRMAEMTASDVMVPAPRMDL IDIDQPFEALLHQVIDTAHSRFPVYQGERENIIGILMAKDLLKLQRAPELNLRALLRSVVYVPESKGLNDLLREFRANRI HMAVVIDEFGRVAGLVTIEDVLEQIVGEIEDEFDIPEDEGDIFALADRTYRVSGDTPVERVAEAFDLPALEGSDKDEEFE TIGGLIAHELGHAPRRGESLDLGGLRFVVLHTKGGAVRWFKVSPQPPGAEPDAG >Mature_293_residues SDPHPARPSDREDKRTFLQRLIEFIHPGPDSKDELIATLAEAEDNDVINADARVMLERVLRMAEMTASDVMVPAPRMDLI DIDQPFEALLHQVIDTAHSRFPVYQGERENIIGILMAKDLLKLQRAPELNLRALLRSVVYVPESKGLNDLLREFRANRIH MAVVIDEFGRVAGLVTIEDVLEQIVGEIEDEFDIPEDEGDIFALADRTYRVSGDTPVERVAEAFDLPALEGSDKDEEFET IGGLIAHELGHAPRRGESLDLGGLRFVVLHTKGGAVRWFKVSPQPPGAEPDAG
Specific function: Plays a role in the transport of magnesium and cobalt ions [H]
COG id: COG4535
COG function: function code P; Putative Mg2+ and Co2+ transporter CorC
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
Organism=Homo sapiens, GI310128564, Length=206, Percent_Identity=29.6116504854369, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI40068053, Length=177, Percent_Identity=27.683615819209, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI40068055, Length=177, Percent_Identity=27.683615819209, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1786879, Length=294, Percent_Identity=41.156462585034, Blast_Score=182, Evalue=2e-47, Organism=Escherichia coli, GI87082033, Length=252, Percent_Identity=31.3492063492063, Blast_Score=117, Evalue=8e-28, Organism=Escherichia coli, GI1788119, Length=242, Percent_Identity=30.9917355371901, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI145693175, Length=276, Percent_Identity=26.8115942028986, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1790664, Length=242, Percent_Identity=25.2066115702479, Blast_Score=86, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016169 - InterPro: IPR000644 - InterPro: IPR005170 [H]
Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC [H]
EC number: NA
Molecular weight: Translated: 32770; Mature: 32638
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPHPARPSDREDKRTFLQRLIEFIHPGPDSKDELIATLAEAEDNDVINADARVMLERV CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEECHHHHHHHHHH LRMAEMTASDVMVPAPRMDLIDIDQPFEALLHQVIDTAHSRFPVYQGERENIIGILMAKD HHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH LLKLQRAPELNLRALLRSVVYVPESKGLNDLLREFRANRIHMAVVIDEFGRVAGLVTIED HHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHH VLEQIVGEIEDEFDIPEDEGDIFALADRTYRVSGDTPVERVAEAFDLPALEGSDKDEEFE HHHHHHHHHHHHCCCCCCCCCEEEEECCEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHH TIGGLIAHELGHAPRRGESLDLGGLRFVVLHTKGGAVRWFKVSPQPPGAEPDAG HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCC >Mature Secondary Structure SDPHPARPSDREDKRTFLQRLIEFIHPGPDSKDELIATLAEAEDNDVINADARVMLERV CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEECHHHHHHHHHH LRMAEMTASDVMVPAPRMDLIDIDQPFEALLHQVIDTAHSRFPVYQGERENIIGILMAKD HHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH LLKLQRAPELNLRALLRSVVYVPESKGLNDLLREFRANRIHMAVVIDEFGRVAGLVTIED HHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHH VLEQIVGEIEDEFDIPEDEGDIFALADRTYRVSGDTPVERVAEAFDLPALEGSDKDEEFE HHHHHHHHHHHHCCCCCCCCCEEEEECCEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHH TIGGLIAHELGHAPRRGESLDLGGLRFVVLHTKGGAVRWFKVSPQPPGAEPDAG HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12089438 [H]