Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

Click here to switch to the map view.

The map label for this gene is 120612761

Identifier: 120612761

GI number: 120612761

Start: 4580044

End: 4580466

Strand: Direct

Name: 120612761

Synonym: Aave_4124

Alternate gene names: NA

Gene position: 4580044-4580466 (Clockwise)

Preceding gene: 120612760

Following gene: 120612762

Centisome position: 85.56

GC content: 66.9

Gene sequence:

>423_bases
ATGTCTAAGGGACTCACCCGCGACACGGCGCAGCTCTGGAACTTCCTACGCGCCGACAAAGGCTGGTGGAGCGTGCTGCG
CCTGACCAGCCACTGGGCGCCCACCTTCACTGAGCGCGAGGTCGAGGAGCACATGGAGACGCTGTCCCGTGGCCGATTCG
TGGTCTCCAAAGACACAGAGCGCATGGGAACGGTGTACGCCGTCACACCGGACTGTCACCTACTGCCAGGCACGACAGCG
CCCGCCCCGATGTCGCAGCCGCCCAGCACCGACATCGAGCTGGTGCCCCCTCCGCGCCACGACGTCATGAGCACGTTCTA
CCGGCCAACGCCCACCAACTACCGCCCCGGCGCACTGGACCACCAGCGCCACCCCAGCCTGATCGGCGACAGGCGTCTCA
CCCACCGGAGCCCGAAGGTATGA

Upstream 100 bases:

>100_bases
GTGTCCCGCCGCCTGGCGATCTTCGACGCTCGCCGTGATTACTGCGACTTCGTCGGCCTGAGCCACAAGCATCTGCTGCA
GCTCGTTCGAGGAGGTGCTC

Downstream 100 bases:

>100_bases
CCACCGACCAATCCCGCCCCGCGATGTCTGATGCCGAGAAGGTCAAGGCCGTCGAAGCGCTCTCGAAGCAACTGTTGTCC
TGCGCACTGCAGGCCACCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSKGLTRDTAQLWNFLRADKGWWSVLRLTSHWAPTFTEREVEEHMETLSRGRFVVSKDTERMGTVYAVTPDCHLLPGTTA
PAPMSQPPSTDIELVPPPRHDVMSTFYRPTPTNYRPGALDHQRHPSLIGDRRLTHRSPKV

Sequences:

>Translated_140_residues
MSKGLTRDTAQLWNFLRADKGWWSVLRLTSHWAPTFTEREVEEHMETLSRGRFVVSKDTERMGTVYAVTPDCHLLPGTTA
PAPMSQPPSTDIELVPPPRHDVMSTFYRPTPTNYRPGALDHQRHPSLIGDRRLTHRSPKV
>Mature_139_residues
SKGLTRDTAQLWNFLRADKGWWSVLRLTSHWAPTFTEREVEEHMETLSRGRFVVSKDTERMGTVYAVTPDCHLLPGTTAP
APMSQPPSTDIELVPPPRHDVMSTFYRPTPTNYRPGALDHQRHPSLIGDRRLTHRSPKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16015; Mature: 15884

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGLTRDTAQLWNFLRADKGWWSVLRLTSHWAPTFTEREVEEHMETLSRGRFVVSKDTE
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCC
RMGTVYAVTPDCHLLPGTTAPAPMSQPPSTDIELVPPPRHDVMSTFYRPTPTNYRPGALD
HHCEEEEECCCCEECCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCC
HQRHPSLIGDRRLTHRSPKV
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKGLTRDTAQLWNFLRADKGWWSVLRLTSHWAPTFTEREVEEHMETLSRGRFVVSKDTE
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCC
RMGTVYAVTPDCHLLPGTTAPAPMSQPPSTDIELVPPPRHDVMSTFYRPTPTNYRPGALD
HHCEEEEECCCCEECCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCC
HQRHPSLIGDRRLTHRSPKV
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA