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The map label for this gene is bphB [H]

Identifier: 120612675

GI number: 120612675

Start: 4489608

End: 4490330

Strand: Reverse

Name: bphB [H]

Synonym: Aave_4038

Alternate gene names: 120612675

Gene position: 4490330-4489608 (Counterclockwise)

Preceding gene: 120612676

Following gene: 120612673

Centisome position: 83.89

GC content: 73.03

Gene sequence:

>723_bases
ATGGCGGCCGCGCACGACGAGTTTCTGCACGCGGTGTCCCACGATCTGCGCGCACCGCTGCGGCATATCGTGTCCTTCGG
CCCGCTGGTGCGGGAACTGGTCGAGGACGAGGCGCAGGGCCTGCCCGCCGGGGCGCGTGCGGAGGCCTGCAGTTTCCTGG
GCACCATGGACCAGGCTTCCCGCCGCATGGGCCGCATGCTCGACGGCCTGCTCGCGCTCTCGCGCATCGCCCGCGCGCCG
CTGCACCGGGCACCGGTGGATCTGAACGAACTGCTGGCCGGCATGCCGTCCGCGCTGGCCGGCGAGGCGCCCGGCCGCCG
CGTGGAGTGGCGCATCGCCCCCGGCCTGCCGACAGTGGCGGGCGATGCCGCGCTGCTCCGCCAGCTGTTCAACGAGCTGC
TCGGCAATGCGCTCAAGTTCACGCGCGACCGCACGCCGGCCATCGTCGAGATCGAAGGGGACGTCGCCGGGGACGGATCG
GCCCGGCTGGCGGTGCGCGACAACGGCACGGGTTTCGATCCGGCGCGTGCCGGCATGCTGTTCGGCGTGTTCCAGCGCCT
GCACCGCGATGCGGATTTCGACGGCATGGGAGTGGGCCTCGCCAAGGCGCGCGCGATCATGCAGCGCCACCGCGGGCGCA
TCGGCATCGACGCGGTGCCGGGCGAAGGCTGCACCGTCGTGCTGGCATGGCCTCCCGGCGCTGCAGACGCACCCACGCCG
TAA

Upstream 100 bases:

>100_bases
CGCCGCCTGTCCGTCCGGGCCGGGGCCATCCCCGTACGAGGGCCTGGATGCGCCCGCGCTGCGTGCTTTGCTGGCCGAGC
GCGACCGCGCGCTGGCCGAC

Downstream 100 bases:

>100_bases
AGCGTTCGATCCGGAAGTTCCTGCGGCCCAGGGGGCGTGGCGTCCTCGGTCATTCGCCCCGCAAGAGCGGAATGCGCGTG
TCGAACTTGGCGCGCTTGAC

Product: histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MAAAHDEFLHAVSHDLRAPLRHIVSFGPLVRELVEDEAQGLPAGARAEACSFLGTMDQASRRMGRMLDGLLALSRIARAP
LHRAPVDLNELLAGMPSALAGEAPGRRVEWRIAPGLPTVAGDAALLRQLFNELLGNALKFTRDRTPAIVEIEGDVAGDGS
ARLAVRDNGTGFDPARAGMLFGVFQRLHRDADFDGMGVGLAKARAIMQRHRGRIGIDAVPGEGCTVVLAWPPGAADAPTP

Sequences:

>Translated_240_residues
MAAAHDEFLHAVSHDLRAPLRHIVSFGPLVRELVEDEAQGLPAGARAEACSFLGTMDQASRRMGRMLDGLLALSRIARAP
LHRAPVDLNELLAGMPSALAGEAPGRRVEWRIAPGLPTVAGDAALLRQLFNELLGNALKFTRDRTPAIVEIEGDVAGDGS
ARLAVRDNGTGFDPARAGMLFGVFQRLHRDADFDGMGVGLAKARAIMQRHRGRIGIDAVPGEGCTVVLAWPPGAADAPTP
>Mature_239_residues
AAAHDEFLHAVSHDLRAPLRHIVSFGPLVRELVEDEAQGLPAGARAEACSFLGTMDQASRRMGRMLDGLLALSRIARAPL
HRAPVDLNELLAGMPSALAGEAPGRRVEWRIAPGLPTVAGDAALLRQLFNELLGNALKFTRDRTPAIVEIEGDVAGDGSA
RLAVRDNGTGFDPARAGMLFGVFQRLHRDADFDGMGVGLAKARAIMQRHRGRIGIDAVPGEGCTVVLAWPPGAADAPTP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=231, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786600, Length=229, Percent_Identity=28.82096069869, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788713, Length=234, Percent_Identity=22.6495726495727, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790346, Length=237, Percent_Identity=24.8945147679325, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI145693157, Length=240, Percent_Identity=27.0833333333333, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788393, Length=230, Percent_Identity=27.8260869565217, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1786912, Length=234, Percent_Identity=28.2051282051282, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 25440; Mature: 25308

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAHDEFLHAVSHDLRAPLRHIVSFGPLVRELVEDEAQGLPAGARAEACSFLGTMDQAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RRMGRMLDGLLALSRIARAPLHRAPVDLNELLAGMPSALAGEAPGRRVEWRIAPGLPTVA
HHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCHHHCCCCCCCEEEEEECCCCCCCC
GDAALLRQLFNELLGNALKFTRDRTPAIVEIEGDVAGDGSARLAVRDNGTGFDPARAGML
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHH
FGVFQRLHRDADFDGMGVGLAKARAIMQRHRGRIGIDAVPGEGCTVVLAWPPGAADAPTP
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
AAAHDEFLHAVSHDLRAPLRHIVSFGPLVRELVEDEAQGLPAGARAEACSFLGTMDQAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RRMGRMLDGLLALSRIARAPLHRAPVDLNELLAGMPSALAGEAPGRRVEWRIAPGLPTVA
HHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCHHHCCCCCCCEEEEEECCCCCCCC
GDAALLRQLFNELLGNALKFTRDRTPAIVEIEGDVAGDGSARLAVRDNGTGFDPARAGML
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHH
FGVFQRLHRDADFDGMGVGLAKARAIMQRHRGRIGIDAVPGEGCTVVLAWPPGAADAPTP
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]