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The map label for this gene is rbn [C]

Identifier: 120612666

GI number: 120612666

Start: 4476911

End: 4477861

Strand: Reverse

Name: rbn [C]

Synonym: Aave_4029

Alternate gene names: 120612666

Gene position: 4477861-4476911 (Counterclockwise)

Preceding gene: 120612670

Following gene: 120612665

Centisome position: 83.65

GC content: 67.82

Gene sequence:

>951_bases
ATGCCGGAAAAAAATCTCAAGAGTTCATGGGCCCTTGTCAAACAGGCGGCCTCGTCGTGGGTGGATGACTACGCGCCGAG
CATGGGCGCAGCGCTGTCTTACTACAGCGTGTTCTCGCTCGCGCCCTTGCTGGTGATCGTCATTTCCATCGCGGGGCTCG
TGTTCGGGGAAGAGGCCGCGCGCGGCGAGGTATTCGCGCAGCTCAGCGGCCTGATGGGCACGGATGCCGCCGCGGCGGTG
GAGGAATTGCTCAATGCCGCCGCCAGGCCCGCGACGGGCGTCGCTTCTGCCGTGATCGGGCTGGGCGTGCTGCTGGTCGG
CGCCACCACCGTGTTCGGGGAATTGCAGGACGCGCTGGACCGCATCTGGCGGGCACCGGTGCGTGAAGGGGCCACGGGGC
TATGGGGGCTGCTTCGCGCGCGGTTCCTGTCGTTCGGGATGATCCTCGGCATCGCGTTCCTGCTCATGGTGTCGCTCGTC
ATGAGCGCGGCGGTGTCGGCGCTGGGCAAGTGGTGGGCGCCCGCGTTCGGCGGCTGGGAGGTGCTGGCGCAGGCGATCAA
CGCGGCGGTGGGCTTTGCGCTCACCACGGTGGTGTTCGCGACGATCTACAAGATCATGCCGCGCGTGAGCGTGCGCTGGC
ACGACGTCTGGCTGGGCGCCGCGATCACCGCGGTGCTGTTCACCGTGGGCCGGATGCTCATCGGGCTCTACATCGGCAAG
ACCGCGCTGGCTTCCGGCTTCGGTGCCGCGGGGTCGCTGGTGGTCATTTTCGTGTGGGTGTACTACTCGGCGCAGATCTT
CCTGATGGGGGCTGAATTCACATGGGTGTATGCGCGCACCTTCGGATCGATGCGGGAGCGCGTGGAGGACCGGGTATCGC
CTGCCGGCGGCGGGAGCGATGCGGGCGTGGACCCGGAACTGCCCGGAGCGGGTGCCGGCCCGCCACGATGA

Upstream 100 bases:

>100_bases
GGGCCTGCCGCGCCAGCCGGATCCGCCAGCCAGGGGCGGCATGTCGCGTCGTTCCCTGGTCCTACAGGGGCTCATGCGCG
CGGGGGCTAATTTCGGGCCC

Downstream 100 bases:

>100_bases
GTGCCAAGAAAACATCCGTTGACCATCCAGTGGGATGGTAATAGGATGGCGCATGACTTCCCTCCAGAATGTTCAGCGCC
CGCCCAAGGTGAGTGATTCC

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MPEKNLKSSWALVKQAASSWVDDYAPSMGAALSYYSVFSLAPLLVIVISIAGLVFGEEAARGEVFAQLSGLMGTDAAAAV
EELLNAAARPATGVASAVIGLGVLLVGATTVFGELQDALDRIWRAPVREGATGLWGLLRARFLSFGMILGIAFLLMVSLV
MSAAVSALGKWWAPAFGGWEVLAQAINAAVGFALTTVVFATIYKIMPRVSVRWHDVWLGAAITAVLFTVGRMLIGLYIGK
TALASGFGAAGSLVVIFVWVYYSAQIFLMGAEFTWVYARTFGSMRERVEDRVSPAGGGSDAGVDPELPGAGAGPPR

Sequences:

>Translated_316_residues
MPEKNLKSSWALVKQAASSWVDDYAPSMGAALSYYSVFSLAPLLVIVISIAGLVFGEEAARGEVFAQLSGLMGTDAAAAV
EELLNAAARPATGVASAVIGLGVLLVGATTVFGELQDALDRIWRAPVREGATGLWGLLRARFLSFGMILGIAFLLMVSLV
MSAAVSALGKWWAPAFGGWEVLAQAINAAVGFALTTVVFATIYKIMPRVSVRWHDVWLGAAITAVLFTVGRMLIGLYIGK
TALASGFGAAGSLVVIFVWVYYSAQIFLMGAEFTWVYARTFGSMRERVEDRVSPAGGGSDAGVDPELPGAGAGPPR
>Mature_315_residues
PEKNLKSSWALVKQAASSWVDDYAPSMGAALSYYSVFSLAPLLVIVISIAGLVFGEEAARGEVFAQLSGLMGTDAAAAVE
ELLNAAARPATGVASAVIGLGVLLVGATTVFGELQDALDRIWRAPVREGATGLWGLLRARFLSFGMILGIAFLLMVSLVM
SAAVSALGKWWAPAFGGWEVLAQAINAAVGFALTTVVFATIYKIMPRVSVRWHDVWLGAAITAVLFTVGRMLIGLYIGKT
ALASGFGAAGSLVVIFVWVYYSAQIFLMGAEFTWVYARTFGSMRERVEDRVSPAGGGSDAGVDPELPGAGAGPPR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33159; Mature: 33028

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKNLKSSWALVKQAASSWVDDYAPSMGAALSYYSVFSLAPLLVIVISIAGLVFGEEAA
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
RGEVFAQLSGLMGTDAAAAVEELLNAAARPATGVASAVIGLGVLLVGATTVFGELQDALD
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIWRAPVREGATGLWGLLRARFLSFGMILGIAFLLMVSLVMSAAVSALGKWWAPAFGGWE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
VLAQAINAAVGFALTTVVFATIYKIMPRVSVRWHDVWLGAAITAVLFTVGRMLIGLYIGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALASGFGAAGSLVVIFVWVYYSAQIFLMGAEFTWVYARTFGSMRERVEDRVSPAGGGSD
HHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
AGVDPELPGAGAGPPR
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PEKNLKSSWALVKQAASSWVDDYAPSMGAALSYYSVFSLAPLLVIVISIAGLVFGEEAA
CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH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CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA