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The map label for this gene is yfdE [H]

Identifier: 120612623

GI number: 120612623

Start: 4417542

End: 4418606

Strand: Direct

Name: yfdE [H]

Synonym: Aave_3984

Alternate gene names: 120612623

Gene position: 4417542-4418606 (Clockwise)

Preceding gene: 120612621

Following gene: 120612624

Centisome position: 82.53

GC content: 73.24

Gene sequence:

>1065_bases
TTGACGGGCGACCAGGCGCGGCACATCGGCAGCTACGGCGAGTCGATGATCCGGGCCTACAGCCGCGGCAAGCAGTCGAT
CGCGCTCGACCTCAAGAGCGAGGCGGGCCGCGAGATCGCGTGGCGGCTGATCGGCCGCAGCGACGTGCTGATCCAGAACC
TGCGGCCCGGCGCCATCGAGTCGCTGGGCTTCGGCCCGGCGGCGGTGCGCGAGCGCTTTCCCGCGCTCATCTACCTCTCC
ATTTCGGGTTTCGGCCACCGGGGCCCCTCGAGCGGACGGCCGGGCTACGACATCGCCGCGCAGGCGGAAAGCGGCCTGAT
GTCCGTCACGGGCGAGCGCGACCGGCTGCCGCAGAAAGTGGGTGTGCCGGTCATCGACGCCGCCGCGGCCCACCTGGGCG
CGCAGGCCGTGCTGGCGGCACTGTACGGCCGGTCGCGCACCGGCCGTGGCGAGACGCTGCACACGTCCCTGCTCGAGGTG
GCGATGCACCTGCAGGCCACGACCTGGTGCGACTACCTGGGCGGCGCTCCCGAGCCCACGCGCATCGGCGACGGCCAGCC
CCACAACGCGCCGGCGGCCGAAGTGCTGCCCACGCGCGACGGCCATATCGTGCTGTCGGCCTATGCGGAGGACCACTGGG
CGCGCTTCTGCCGCGCCGTCGGACGCGAGGAACTGATCACGGAACCCCGCTTTCGCAGCAACGCCCTGCGCGTGCGGCAC
CGCGAGGAACTCCGGGCCGTGCTGCGCGACTGCCTGTCGTCGATGAGCAGCGAGGAATGCGTCGCACTGCTCAGCCGCCA
CCAGATCGTGGTCGGTGCCGTGCGCAGCTATGGGCAAGTGCTGCAGAGCCCGGACGTGCAGGCCAGCGGCATGCTGGTGG
AGGCGGCGGCGGCCGACGGCACGCGGCATGGCGCGCTGGCCCTGCCCTACGCCTTCGGCGACGCGCCCCGCGCCGCGCCG
AAGGCGGCCCCGGCCTGCGGCGGCGACACCGACGCCGTGCTGGACACGCTGGGCTTCGACGCGCACCAGATCACCGCACT
GCGCCGCCAGGGCTCCGTCGCCTGA

Upstream 100 bases:

>100_bases
GAGGGCGTGCGCGTGCTGGACCTGGGCCAGTACATCGCGGGCCCGGGCGCGGCGATGGTCCTGGCGGAACTGGGCGCCGA
GGTGATCAAGGTCGAAACCG

Downstream 100 bases:

>100_bases
GGCACCCACAACTCCCGGATCTCCGATGACGCTCCACCCCCCAACCGGCTTCACCCCGGCGGCCGCCGAGGCCGCCGTGA
TCCAGACCCTGCCCCTCTTC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MTGDQARHIGSYGESMIRAYSRGKQSIALDLKSEAGREIAWRLIGRSDVLIQNLRPGAIESLGFGPAAVRERFPALIYLS
ISGFGHRGPSSGRPGYDIAAQAESGLMSVTGERDRLPQKVGVPVIDAAAAHLGAQAVLAALYGRSRTGRGETLHTSLLEV
AMHLQATTWCDYLGGAPEPTRIGDGQPHNAPAAEVLPTRDGHIVLSAYAEDHWARFCRAVGREELITEPRFRSNALRVRH
REELRAVLRDCLSSMSSEECVALLSRHQIVVGAVRSYGQVLQSPDVQASGMLVEAAAADGTRHGALALPYAFGDAPRAAP
KAAPACGGDTDAVLDTLGFDAHQITALRRQGSVA

Sequences:

>Translated_354_residues
MTGDQARHIGSYGESMIRAYSRGKQSIALDLKSEAGREIAWRLIGRSDVLIQNLRPGAIESLGFGPAAVRERFPALIYLS
ISGFGHRGPSSGRPGYDIAAQAESGLMSVTGERDRLPQKVGVPVIDAAAAHLGAQAVLAALYGRSRTGRGETLHTSLLEV
AMHLQATTWCDYLGGAPEPTRIGDGQPHNAPAAEVLPTRDGHIVLSAYAEDHWARFCRAVGREELITEPRFRSNALRVRH
REELRAVLRDCLSSMSSEECVALLSRHQIVVGAVRSYGQVLQSPDVQASGMLVEAAAADGTRHGALALPYAFGDAPRAAP
KAAPACGGDTDAVLDTLGFDAHQITALRRQGSVA
>Mature_353_residues
TGDQARHIGSYGESMIRAYSRGKQSIALDLKSEAGREIAWRLIGRSDVLIQNLRPGAIESLGFGPAAVRERFPALIYLSI
SGFGHRGPSSGRPGYDIAAQAESGLMSVTGERDRLPQKVGVPVIDAAAAHLGAQAVLAALYGRSRTGRGETLHTSLLEVA
MHLQATTWCDYLGGAPEPTRIGDGQPHNAPAAEVLPTRDGHIVLSAYAEDHWARFCRAVGREELITEPRFRSNALRVRHR
EELRAVLRDCLSSMSSEECVALLSRHQIVVGAVRSYGQVLQSPDVQASGMLVEAAAADGTRHGALALPYAFGDAPRAAPK
AAPACGGDTDAVLDTLGFDAHQITALRRQGSVA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=274, Percent_Identity=31.021897810219, Blast_Score=148, Evalue=7e-36,
Organism=Homo sapiens, GI300863124, Length=271, Percent_Identity=30.9963099630996, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI300863126, Length=274, Percent_Identity=28.1021897810219, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI13376042, Length=216, Percent_Identity=30.5555555555556, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266456254, Length=334, Percent_Identity=26.3473053892216, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI42794625, Length=334, Percent_Identity=26.3473053892216, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458393, Length=231, Percent_Identity=30.7359307359307, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458397, Length=187, Percent_Identity=34.2245989304813, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458395, Length=84, Percent_Identity=44.047619047619, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI42822893, Length=84, Percent_Identity=44.047619047619, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI87082093, Length=296, Percent_Identity=32.7702702702703, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1788717, Length=374, Percent_Identity=28.0748663101604, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1786222, Length=339, Percent_Identity=23.0088495575221, Blast_Score=79, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=149, Percent_Identity=32.8859060402685, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648431, Length=358, Percent_Identity=33.2402234636872, Blast_Score=183, Evalue=2e-46,
Organism=Drosophila melanogaster, GI24585488, Length=163, Percent_Identity=31.9018404907975, Blast_Score=92, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 37711; Mature: 37580

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGDQARHIGSYGESMIRAYSRGKQSIALDLKSEAGREIAWRLIGRSDVLIQNLRPGAIE
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHCCCHHHHHCCCCCHHH
SLGFGPAAVRERFPALIYLSISGFGHRGPSSGRPGYDIAAQAESGLMSVTGERDRLPQKV
HCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEECCCHHCCHHHH
GVPVIDAAAAHLGAQAVLAALYGRSRTGRGETLHTSLLEVAMHLQATTWCDYLGGAPEPT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RIGDGQPHNAPAAEVLPTRDGHIVLSAYAEDHWARFCRAVGREELITEPRFRSNALRVRH
CCCCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHH
REELRAVLRDCLSSMSSEECVALLSRHQIVVGAVRSYGQVLQSPDVQASGMLVEAAAADG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
TRHGALALPYAFGDAPRAAPKAAPACGGDTDAVLDTLGFDAHQITALRRQGSVA
CCCCCEEECEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TGDQARHIGSYGESMIRAYSRGKQSIALDLKSEAGREIAWRLIGRSDVLIQNLRPGAIE
CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHCCCHHHHHCCCCCHHH
SLGFGPAAVRERFPALIYLSISGFGHRGPSSGRPGYDIAAQAESGLMSVTGERDRLPQKV
HCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEECCCHHCCHHHH
GVPVIDAAAAHLGAQAVLAALYGRSRTGRGETLHTSLLEVAMHLQATTWCDYLGGAPEPT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
RIGDGQPHNAPAAEVLPTRDGHIVLSAYAEDHWARFCRAVGREELITEPRFRSNALRVRH
CCCCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHH
REELRAVLRDCLSSMSSEECVALLSRHQIVVGAVRSYGQVLQSPDVQASGMLVEAAAADG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
TRHGALALPYAFGDAPRAAPKAAPACGGDTDAVLDTLGFDAHQITALRRQGSVA
CCCCCEEECEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]