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The map label for this gene is sdiA [C]

Identifier: 120612451

GI number: 120612451

Start: 4232080

End: 4232808

Strand: Direct

Name: sdiA [C]

Synonym: Aave_3810

Alternate gene names: 120612451

Gene position: 4232080-4232808 (Clockwise)

Preceding gene: 120612450

Following gene: 120612452

Centisome position: 79.06

GC content: 61.04

Gene sequence:

>729_bases
ATGATTCTGCGCGATTTCATCCAGAGAGCCAACCAAGCCCTCACACAGACCGAACTGTTGGCCTGCTTTGAACAGGCGGT
GCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGA
TCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTT
CGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCAT
GGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGA
CCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCG
CTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCT
CACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATC
TCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGGTCTCATATCG
ATACCCTGA

Upstream 100 bases:

>100_bases
CCCCGGCATGGGCATCTTTGCCCGAATAGCGCGGCCCGGCATATAGCTCCTGCCATCGAACTGGCACCGGCAACCAACGC
ATACGTCGAGGAACTCTGCA

Downstream 100 bases:

>100_bases
GGGCCGAGCCGGACGTCCAGTCCGGCGCGGCGGTACAAGGGCAGATGCGGCCGCGCACCGCCACATCGACTCGACAGTAC
GCAGATTAGGCATTTTCTTC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MILRDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPSRWVSHYIARNYYLEDPV
RRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPIHEPGGRIFLATVASHQQLTLGNDACVRTYALVTAFHA
LYTMRFATEQTQIPTAVKLTSREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLIS
IP

Sequences:

>Translated_242_residues
MILRDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPSRWVSHYIARNYYLEDPV
RRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPIHEPGGRIFLATVASHQQLTLGNDACVRTYALVTAFHA
LYTMRFATEQTQIPTAVKLTSREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLIS
IP
>Mature_242_residues
MILRDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPSRWVSHYIARNYYLEDPV
RRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPIHEPGGRIFLATVASHQQLTLGNDACVRTYALVTAFHA
LYTMRFATEQTQIPTAVKLTSREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLIS
IP

Specific function: Activates Cell Division By Specifically Increasing Transcription From One Of The Two Promoters That Lie Immediately Upstream Of The Ftsqaz Gene Cluster. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=241, Percent_Identity=30.7053941908714, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27034; Mature: 27034

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCEEECCC
YPSRWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLG
CHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCCCC
LPIHEPGGRIFLATVASHQQLTLGNDACVRTYALVTAFHALYTMRFATEQTQIPTAVKLT
CCEECCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
SREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLIS
CCCCCEEEEEEECCCCCCHHHEEEEEHHHEEEHHHHHHHHHCHHHHHHHHHHHHCCCEEE
IP
CC
>Mature Secondary Structure
MILRDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCEEECCC
YPSRWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLG
CHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEHHCCCCCCCCCCCC
LPIHEPGGRIFLATVASHQQLTLGNDACVRTYALVTAFHALYTMRFATEQTQIPTAVKLT
CCEECCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
SREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLIS
CCCCCEEEEEEECCCCCCHHHEEEEEHHHEEEHHHHHHHHHCHHHHHHHHHHHHCCCEEE
IP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]