Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ureF
Identifier: 120612183
GI number: 120612183
Start: 3905608
End: 3906363
Strand: Direct
Name: ureF
Synonym: Aave_3532
Alternate gene names: 120612183
Gene position: 3905608-3906363 (Clockwise)
Preceding gene: 120612182
Following gene: 120612184
Centisome position: 72.96
GC content: 73.54
Gene sequence:
>756_bases ATGGCGCCTGCACCCGATCCCGCTCCCGCCGGTTCCGCAGCACCTGATCCGGCATCGGCGCCACAAGGCCTGCCCGCGGC CAGCCTGCTGCAGCTCATCTGGCTCGCCTCGCCCGCCCTGCCCGTGGGCGGCTTCTCGTACTCCGAAGGCCTGGAGATCG CCGTCGAATGCGCGGGCGTCACCAACGAGTCTGCAGCCGCCGCCTGGCTGCAGGAACAGCTCATGCTCACCCAGGCCCGC GGCGACCTCGCCGTCGTCCACCAGGCCCTCGCCGCTTGGCGCGCGGGCGACGCGGAGCGTGTGCGCGCCCTCAACGACTG GGTGCTGCACACCCGAGAAACCAGCGAACTGCGCCTGCAGACCGAGCAGATGGGCCGCTCCCTCGCCGACTGGCTGCGCA ACCAGCACGCGGGCGATGCGGAGGCCCTGTCCGACGTCGCCCGCCTCGCCGCCCTGCCGCCCACCTACCCCGTCGCCTTC GCCCTGGCCGCCGCGCGCACCCAGGCGCGCGCCGAAGACGTGCTGCTCGCCTGCGCCTTCGGCTGGGCCGAGAACATGGT GCAGGCCGCCATCAAGGCCGTGCCCCTGGGCCAGAGCGCCGGCCAGCGCATCCTCGCGCGGCTCGCCGCGGCCATTCCCG GCGCCGTGGCCCACGCCATGCAGCTGGGCGAGGCGGAGCGCCAGGCCTTCTCCCCCATGCTGGCCGTGCTCTCGGCCCGC CACGAAACGCAGTATTCCCGCCTTTTCCGCTCATGA
Upstream 100 bases:
>100_bases GACCACGAGCACAGCCACGACCACGACTGCGGCCACCACCACGATCACGGCCAGGACTATGGCCACGCCCATCCGCATTC CCTCGCCCGCTGACGCGCGC
Downstream 100 bases:
>100_bases CGCCATGAACACGACCGCCCACACCAGCACCTCGCCCCTGCACCACGTCCCGAACCGCACCAAGCCCCTGCCCCCGCTGC GCATCGGCATCGGCGGCCCC
Product: urease accessory protein UreF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MAPAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGVTNESAAAAWLQEQLMLTQAR GDLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQTEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAF ALAAARTQARAEDVLLACAFGWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSAR HETQYSRLFRS
Sequences:
>Translated_251_residues MAPAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGVTNESAAAAWLQEQLMLTQAR GDLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQTEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAF ALAAARTQARAEDVLLACAFGWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSAR HETQYSRLFRS >Mature_250_residues APAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGVTNESAAAAWLQEQLMLTQARG DLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQTEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAFA LAAARTQARAEDVLLACAFGWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSARH ETQYSRLFRS
Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter
COG id: COG0830
COG function: function code O; Urease accessory protein UreF
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ureF family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): UREF_ACIAC (A1TSZ9)
Other databases:
- EMBL: CP000512 - RefSeq: YP_971861.1 - STRING: A1TSZ9 - GeneID: 4667491 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_3532 - NMPDR: fig|397945.5.peg.3019 - eggNOG: COG0830 - HOGENOM: HBG709295 - OMA: SPQLPIG - ProtClustDB: CLSK722448 - BioCyc: AAVE397945:AAVE_3532-MONOMER - GO: GO:0005737 - HAMAP: MF_01385 - InterPro: IPR002639 - PIRSF: PIRSF009467
Pfam domain/function: PF01730 UreF
EC number: NA
Molecular weight: Translated: 26411; Mature: 26280
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGV CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC TNESAAAAWLQEQLMLTQARGDLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQ CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH TEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAFALAAARTQARAEDVLLACAF HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSAR HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HETQYSRLFRS HHHHHHHHHCC >Mature Secondary Structure APAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGV CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC TNESAAAAWLQEQLMLTQARGDLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQ CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH TEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAFALAAARTQARAEDVLLACAF HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSAR HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HETQYSRLFRS HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA