Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ureF

Identifier: 120612183

GI number: 120612183

Start: 3905608

End: 3906363

Strand: Direct

Name: ureF

Synonym: Aave_3532

Alternate gene names: 120612183

Gene position: 3905608-3906363 (Clockwise)

Preceding gene: 120612182

Following gene: 120612184

Centisome position: 72.96

GC content: 73.54

Gene sequence:

>756_bases
ATGGCGCCTGCACCCGATCCCGCTCCCGCCGGTTCCGCAGCACCTGATCCGGCATCGGCGCCACAAGGCCTGCCCGCGGC
CAGCCTGCTGCAGCTCATCTGGCTCGCCTCGCCCGCCCTGCCCGTGGGCGGCTTCTCGTACTCCGAAGGCCTGGAGATCG
CCGTCGAATGCGCGGGCGTCACCAACGAGTCTGCAGCCGCCGCCTGGCTGCAGGAACAGCTCATGCTCACCCAGGCCCGC
GGCGACCTCGCCGTCGTCCACCAGGCCCTCGCCGCTTGGCGCGCGGGCGACGCGGAGCGTGTGCGCGCCCTCAACGACTG
GGTGCTGCACACCCGAGAAACCAGCGAACTGCGCCTGCAGACCGAGCAGATGGGCCGCTCCCTCGCCGACTGGCTGCGCA
ACCAGCACGCGGGCGATGCGGAGGCCCTGTCCGACGTCGCCCGCCTCGCCGCCCTGCCGCCCACCTACCCCGTCGCCTTC
GCCCTGGCCGCCGCGCGCACCCAGGCGCGCGCCGAAGACGTGCTGCTCGCCTGCGCCTTCGGCTGGGCCGAGAACATGGT
GCAGGCCGCCATCAAGGCCGTGCCCCTGGGCCAGAGCGCCGGCCAGCGCATCCTCGCGCGGCTCGCCGCGGCCATTCCCG
GCGCCGTGGCCCACGCCATGCAGCTGGGCGAGGCGGAGCGCCAGGCCTTCTCCCCCATGCTGGCCGTGCTCTCGGCCCGC
CACGAAACGCAGTATTCCCGCCTTTTCCGCTCATGA

Upstream 100 bases:

>100_bases
GACCACGAGCACAGCCACGACCACGACTGCGGCCACCACCACGATCACGGCCAGGACTATGGCCACGCCCATCCGCATTC
CCTCGCCCGCTGACGCGCGC

Downstream 100 bases:

>100_bases
CGCCATGAACACGACCGCCCACACCAGCACCTCGCCCCTGCACCACGTCCCGAACCGCACCAAGCCCCTGCCCCCGCTGC
GCATCGGCATCGGCGGCCCC

Product: urease accessory protein UreF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MAPAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGVTNESAAAAWLQEQLMLTQAR
GDLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQTEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAF
ALAAARTQARAEDVLLACAFGWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSAR
HETQYSRLFRS

Sequences:

>Translated_251_residues
MAPAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGVTNESAAAAWLQEQLMLTQAR
GDLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQTEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAF
ALAAARTQARAEDVLLACAFGWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSAR
HETQYSRLFRS
>Mature_250_residues
APAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGVTNESAAAAWLQEQLMLTQARG
DLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQTEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAFA
LAAARTQARAEDVLLACAFGWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSARH
ETQYSRLFRS

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0830

COG function: function code O; Urease accessory protein UreF

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UREF_ACIAC (A1TSZ9)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_971861.1
- STRING:   A1TSZ9
- GeneID:   4667491
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_3532
- NMPDR:   fig|397945.5.peg.3019
- eggNOG:   COG0830
- HOGENOM:   HBG709295
- OMA:   SPQLPIG
- ProtClustDB:   CLSK722448
- BioCyc:   AAVE397945:AAVE_3532-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01385
- InterPro:   IPR002639
- PIRSF:   PIRSF009467

Pfam domain/function: PF01730 UreF

EC number: NA

Molecular weight: Translated: 26411; Mature: 26280

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC
TNESAAAAWLQEQLMLTQARGDLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQ
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
TEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAFALAAARTQARAEDVLLACAF
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSAR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HETQYSRLFRS
HHHHHHHHHCC
>Mature Secondary Structure 
APAPDPAPAGSAAPDPASAPQGLPAASLLQLIWLASPALPVGGFSYSEGLEIAVECAGV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC
TNESAAAAWLQEQLMLTQARGDLAVVHQALAAWRAGDAERVRALNDWVLHTRETSELRLQ
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
TEQMGRSLADWLRNQHAGDAEALSDVARLAALPPTYPVAFALAAARTQARAEDVLLACAF
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GWAENMVQAAIKAVPLGQSAGQRILARLAAAIPGAVAHAMQLGEAERQAFSPMLAVLSAR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HETQYSRLFRS
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA