Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612120
Identifier: 120612120
GI number: 120612120
Start: 3831165
End: 3832034
Strand: Reverse
Name: 120612120
Synonym: Aave_3467
Alternate gene names: NA
Gene position: 3832034-3831165 (Counterclockwise)
Preceding gene: 120612121
Following gene: 120612118
Centisome position: 71.59
GC content: 75.06
Gene sequence:
>870_bases ATGAGCGGGCATTGCGAGATGCCGGTGCCCGCGTGGGTGGCACCGGCCCGCGCGCTGGCGCACCGGCCGGCTATGGTGCC GCGTGTGCTGTTCGCCGTGGCCGGGCAGATCGTGGGCTCGGTGGCGCCGGGGGTGATGGAAGGAATCGCGCTGGACAGCG ACGCTGACCGGGCCGACGGGGCCGACGGGGCCGACGGGGCCGTTGCCGCTGCGGCCTCGCTGGTGAAGGAACGCCACGCC GGGGCCGAGCGCTGGCACCTGGCCTGCGCCCCGGCCGATGCCACGCCTGCGCTGGCCGCGCTGGCGAATGCGCTGCGCCG CGCCGGGCGCTGCGGGGCGTGGCGCGAGGAGCAACTGGCGGTGTGCAACGCGGCGGGCGAGCGCATCGGCACGGTGGAGC GCGGCGCGGTGCGCGCGCTGGGCATCGCCACGCGGGCGGTGCACCTCGTGGCCTGCGCGCCGGACGGGCGGCAGTGGGTG CAGCAGCGCGCGTTCGACAAGCCCAGCCACCCGGGCCGGTGGGACACGCTCATGGGCGGCATGGTGAGCGCGCAGGACAC GGTGGAATCCGCCCTGGCGCGCGAGACCTGGGAAGAAGCCGGGCTGCGCATCGAGGCGCTGCAGGCCGTGGCGCACGGTG GCCATGTCGATTTCTCGCGCCCGAGCGATGAAGGCGAGGGCGCGGGCTACATGGTGGAGCGCATCGACTGGTTCCGCGCC ACCGTGCCCGAAGGCGTGGTGCCGGCCAACCAGGACGGCGAGGTGGAGCGCTTCGAGTTGCTGGAGGCGGCCGAAGTGCA GGCACGCCTCGCGCAGGGCGCGTTCACGCCCGAAGCGGCACTGGTGCTGGCCGGCTTCTACGGCTGGTGA
Upstream 100 bases:
>100_bases CGATCCACATCGACCAGCGCTACCCGCTGCGCGACGTGCAGCAGGCGCACCGCGACCTGGAAGCGCGCAAGACCACGGGC TCCACCATCCTGACGCTGGA
Downstream 100 bases:
>100_bases CCTGGCGCGGGGCAGGGCGGCGGGCGCACCGCCGTCCTCCTTTTCTTTCTTTCTTCCCTCGGTTTCCCCTTCACCGGCGG CCGGCACGCGATACCCGCAC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: NUDIX Domain-Containing Protein; Nucleoside Diphosphate Hydrolase Protein; NUDIX Domain Family Protein; Nudix Hydrolase; NUDIX Domain-Containing; Thiamin Pyrophosphokinase; Hydrolase NUDIX Family
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MSGHCEMPVPAWVAPARALAHRPAMVPRVLFAVAGQIVGSVAPGVMEGIALDSDADRADGADGADGAVAAAASLVKERHA GAERWHLACAPADATPALAALANALRRAGRCGAWREEQLAVCNAAGERIGTVERGAVRALGIATRAVHLVACAPDGRQWV QQRAFDKPSHPGRWDTLMGGMVSAQDTVESALARETWEEAGLRIEALQAVAHGGHVDFSRPSDEGEGAGYMVERIDWFRA TVPEGVVPANQDGEVERFELLEAAEVQARLAQGAFTPEAALVLAGFYGW
Sequences:
>Translated_289_residues MSGHCEMPVPAWVAPARALAHRPAMVPRVLFAVAGQIVGSVAPGVMEGIALDSDADRADGADGADGAVAAAASLVKERHA GAERWHLACAPADATPALAALANALRRAGRCGAWREEQLAVCNAAGERIGTVERGAVRALGIATRAVHLVACAPDGRQWV QQRAFDKPSHPGRWDTLMGGMVSAQDTVESALARETWEEAGLRIEALQAVAHGGHVDFSRPSDEGEGAGYMVERIDWFRA TVPEGVVPANQDGEVERFELLEAAEVQARLAQGAFTPEAALVLAGFYGW >Mature_288_residues SGHCEMPVPAWVAPARALAHRPAMVPRVLFAVAGQIVGSVAPGVMEGIALDSDADRADGADGADGAVAAAASLVKERHAG AERWHLACAPADATPALAALANALRRAGRCGAWREEQLAVCNAAGERIGTVERGAVRALGIATRAVHLVACAPDGRQWVQ QRAFDKPSHPGRWDTLMGGMVSAQDTVESALARETWEEAGLRIEALQAVAHGGHVDFSRPSDEGEGAGYMVERIDWFRAT VPEGVVPANQDGEVERFELLEAAEVQARLAQGAFTPEAALVLAGFYGW
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30364; Mature: 30233
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGHCEMPVPAWVAPARALAHRPAMVPRVLFAVAGQIVGSVAPGVMEGIALDSDADRADG CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC ADGADGAVAAAASLVKERHAGAERWHLACAPADATPALAALANALRRAGRCGAWREEQLA CCCCCHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH VCNAAGERIGTVERGAVRALGIATRAVHLVACAPDGRQWVQQRAFDKPSHPGRWDTLMGG HHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHCC MVSAQDTVESALARETWEEAGLRIEALQAVAHGGHVDFSRPSDEGEGAGYMVERIDWFRA HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH TVPEGVVPANQDGEVERFELLEAAEVQARLAQGAFTPEAALVLAGFYGW HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC >Mature Secondary Structure SGHCEMPVPAWVAPARALAHRPAMVPRVLFAVAGQIVGSVAPGVMEGIALDSDADRADG CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC ADGADGAVAAAASLVKERHAGAERWHLACAPADATPALAALANALRRAGRCGAWREEQLA CCCCCHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH VCNAAGERIGTVERGAVRALGIATRAVHLVACAPDGRQWVQQRAFDKPSHPGRWDTLMGG HHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHCC MVSAQDTVESALARETWEEAGLRIEALQAVAHGGHVDFSRPSDEGEGAGYMVERIDWFRA HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH TVPEGVVPANQDGEVERFELLEAAEVQARLAQGAFTPEAALVLAGFYGW HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA