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The map label for this gene is ycjZ [H]

Identifier: 120612005

GI number: 120612005

Start: 3704782

End: 3705693

Strand: Direct

Name: ycjZ [H]

Synonym: Aave_3351

Alternate gene names: 120612005

Gene position: 3704782-3705693 (Clockwise)

Preceding gene: 120612002

Following gene: 120612006

Centisome position: 69.21

GC content: 65.35

Gene sequence:

>912_bases
ATGCGCGGGTCCGACTATGCCGAGCTGAAGGCTTTCGTGGCCGTCGTGGAACGCCAGAGCTTCGCGCGAGCAGCAGAGCA
TCTGGGACTATCGCCTTCGGCACTCAGCCAGACCATCCGGCAGCTCGAAGGCCGCATCGGCGCCCGCCTTCTGAACCGCA
CGACACGCAGCGTCGCGCCATCGACAAGCGGCGAACAGCTGTACAGGCGCATAGCGCCGCTGTTGCGGGAGATGGCTGCC
GCAGTCGCTGAAACCCGTGAGGCGACAGGCAAGGTGGGCGGCACCCTGCGCATCAACACGCTCGGGATCGCCGCAAGAAC
CGTCATCGCGCCCCGGCTTGCACGTTTCCATCAAGCGCACCCCGACGCGATTCTCGACATCGTGGTGGACGACGCGCTGG
CGGACATCGTCGCAGGCCGATTCGACGCAGGCGTCCGCGTGGGCGGACAGCTCGAGAAAGACATGGTTGCCGTCCGCCTC
ACGCCGGACATGCCCATGGTGGCCGTGGCATCTCCCGACTACATCGCACGCCGGGGCACCCCGAAGTCACCTGCCGATCT
GCATGGCCATGCATGCATCAACTGGCGGCTCCAGGAGGACGGGAGGCACTATCGCTGGGAGTTCAGGAAGCGAGCGCAAC
GCATCGAAGTGGCGGTGGACGGCCCCGTCGTCACCAACCATGCCGACATCGGCATTGCTGCCGCATTGAACGGACTCGGC
ATCGCCTACCACTTCGAGCGAGACGGCGTGGGCGAGTTTCTGGCCCAGGGACGGCTGGTCCAAGTCCTTGCGGACTGGTC
GATTTCGCGCCCGGGGCTTTTTCTCTACTATCCGAGCAGGCGACATCGACCCGCCCTCCTCGGTGCGTTCATCGACTGTC
TGCTGGACCGGGAACCATTCAGCCGGCTCTAG

Upstream 100 bases:

>100_bases
TGGTGGCTCCGTGGGATCAGTGAAGACTCCAGGATGCGCGCAGCAGACAATTTAGTGAATGCCACAAAATCAGCACAGGC
TGTGAAGAAAGGAATACACA

Downstream 100 bases:

>100_bases
GTGTGATGTCTCAATAGGTTGTTCATCCAGGCCCGACCTGGGAAGCTGTGGTTACCAGGCCCCAGCAACTCAGGACAGGA
CACCGGATGAACAGTCATAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRGSDYAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAPSTSGEQLYRRIAPLLREMAA
AVAETREATGKVGGTLRINTLGIAARTVIAPRLARFHQAHPDAILDIVVDDALADIVAGRFDAGVRVGGQLEKDMVAVRL
TPDMPMVAVASPDYIARRGTPKSPADLHGHACINWRLQEDGRHYRWEFRKRAQRIEVAVDGPVVTNHADIGIAAALNGLG
IAYHFERDGVGEFLAQGRLVQVLADWSISRPGLFLYYPSRRHRPALLGAFIDCLLDREPFSRL

Sequences:

>Translated_303_residues
MRGSDYAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAPSTSGEQLYRRIAPLLREMAA
AVAETREATGKVGGTLRINTLGIAARTVIAPRLARFHQAHPDAILDIVVDDALADIVAGRFDAGVRVGGQLEKDMVAVRL
TPDMPMVAVASPDYIARRGTPKSPADLHGHACINWRLQEDGRHYRWEFRKRAQRIEVAVDGPVVTNHADIGIAAALNGLG
IAYHFERDGVGEFLAQGRLVQVLADWSISRPGLFLYYPSRRHRPALLGAFIDCLLDREPFSRL
>Mature_303_residues
MRGSDYAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAPSTSGEQLYRRIAPLLREMAA
AVAETREATGKVGGTLRINTLGIAARTVIAPRLARFHQAHPDAILDIVVDDALADIVAGRFDAGVRVGGQLEKDMVAVRL
TPDMPMVAVASPDYIARRGTPKSPADLHGHACINWRLQEDGRHYRWEFRKRAQRIEVAVDGPVVTNHADIGIAAALNGLG
IAYHFERDGVGEFLAQGRLVQVLADWSISRPGLFLYYPSRRHRPALLGAFIDCLLDREPFSRL

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=40.8163265306122, Blast_Score=237, Evalue=8e-64,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=40.0684931506849, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=32.6530612244898, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=31.1188811188811, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87081978, Length=259, Percent_Identity=32.8185328185328, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789440, Length=274, Percent_Identity=28.1021897810219, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789639, Length=238, Percent_Identity=30.2521008403361, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=29.3918918918919, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788706, Length=274, Percent_Identity=23.7226277372263, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789173, Length=275, Percent_Identity=26.9090909090909, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788748, Length=115, Percent_Identity=36.5217391304348, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=121, Percent_Identity=30.5785123966942, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=188, Percent_Identity=27.6595744680851, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787879, Length=141, Percent_Identity=34.0425531914894, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33268; Mature: 33268

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSDYAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
STSGEQLYRRIAPLLREMAAAVAETREATGKVGGTLRINTLGIAARTVIAPRLARFHQAH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCC
PDAILDIVVDDALADIVAGRFDAGVRVGGQLEKDMVAVRLTPDMPMVAVASPDYIARRGT
CHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEECCCCCEEEECCCCHHHCCCC
PKSPADLHGHACINWRLQEDGRHYRWEFRKRAQRIEVAVDGPVVTNHADIGIAAALNGLG
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHEEEEECCCEEECCCCCHHHHHHCCCE
IAYHFERDGVGEFLAQGRLVQVLADWSISRPGLFLYYPSRRHRPALLGAFIDCLLDREPF
EEEEECCCCHHHHHHCCHHEEHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCHH
SRL
CCC
>Mature Secondary Structure
MRGSDYAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
STSGEQLYRRIAPLLREMAAAVAETREATGKVGGTLRINTLGIAARTVIAPRLARFHQAH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCC
PDAILDIVVDDALADIVAGRFDAGVRVGGQLEKDMVAVRLTPDMPMVAVASPDYIARRGT
CHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEECCCCCEEEECCCCHHHCCCC
PKSPADLHGHACINWRLQEDGRHYRWEFRKRAQRIEVAVDGPVVTNHADIGIAAALNGLG
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHEEEEECCCEEECCCCCHHHHHHCCCE
IAYHFERDGVGEFLAQGRLVQVLADWSISRPGLFLYYPSRRHRPALLGAFIDCLLDREPF
EEEEECCCCHHHHHHCCHHEEHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCHH
SRL
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]