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The map label for this gene is ompA [H]

Identifier: 120611935

GI number: 120611935

Start: 3623458

End: 3624117

Strand: Reverse

Name: ompA [H]

Synonym: Aave_3279

Alternate gene names: 120611935

Gene position: 3624117-3623458 (Counterclockwise)

Preceding gene: 120611951

Following gene: 120611934

Centisome position: 67.71

GC content: 64.55

Gene sequence:

>660_bases
ATGAAGAAACTGAACAAAGTGGCGATGTTGTTGGCCTCTGCCGTGCTGGCTACCTCGGCTGGTGCCCAAGTCAAGGCCGC
TGACGGCGGCAAGGTGATCGACAACTGGCAAAACGGCACCGGCGAGCTGGTGTGGAAGAACGGCACGAACGAACTGTGCT
GGCGCGATGCCAACTGGACGCCCGCCACCGCCGCCGCAGGCTGCGACGGCGCCCTGGTGGCCCAGGCTCCGGCACCGGCT
CCTGCCGCTGCTCCGGCACCTGCAGCTCCCCCTGCCCCCACCCCGGCACCTGCAGCCCCCGTGGCCAACAAGGTGACCTA
CGCCGCCGACGCTTTCTTCGACTTCGACAAGTCCGTGCTGAAGCCCGAAGGCAAGGCCAAGCTGGACGACCTGGTCTCCA
AGGTCAAGAACGTGAACCTGGAAGTCATCATCGCCGTGGGTCACACCGACTCCATCGGTACCGATGCCTACAACCAGAAG
CTGTCCGTGCGCCGCGCCGAAGCCGTGAAGGCCTACCTCGTGTCCAAGGGCATCGAGAAGAACCGCGTGTACACCGAAGG
CAAGGGCGAGAAGCAGCCGATCGCCGACAACAAGACCAAGGAAGGCCGCGCGAAGAACCGCCGCGTGGAAATCGAAGTGG
TTGGCACCCGCGCCAACTGA

Upstream 100 bases:

>100_bases
TTGTTACGTATGGCACAATCAATTCAGCGTTTTTGGTGATGGTCACTGACGACGTCCATATTCGCAGCGCGGCTGCGGCT
TTTTCCCCAAGAGGAGAACC

Downstream 100 bases:

>100_bases
TTTCGGTCAGTTTCCCTTCCCTGAAAGCCCCGGTCTCCGGGGCTTTTTTTATGCCCGCGGCAATTGCGGGCACAATTTGC
CAATGAGCTCCTCCACTGCC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKKLNKVAMLLASAVLATSAGAQVKAADGGKVIDNWQNGTGELVWKNGTNELCWRDANWTPATAAAGCDGALVAQAPAPA
PAAAPAPAAPPAPTPAPAAPVANKVTYAADAFFDFDKSVLKPEGKAKLDDLVSKVKNVNLEVIIAVGHTDSIGTDAYNQK
LSVRRAEAVKAYLVSKGIEKNRVYTEGKGEKQPIADNKTKEGRAKNRRVEIEVVGTRAN

Sequences:

>Translated_219_residues
MKKLNKVAMLLASAVLATSAGAQVKAADGGKVIDNWQNGTGELVWKNGTNELCWRDANWTPATAAAGCDGALVAQAPAPA
PAAAPAPAAPPAPTPAPAAPVANKVTYAADAFFDFDKSVLKPEGKAKLDDLVSKVKNVNLEVIIAVGHTDSIGTDAYNQK
LSVRRAEAVKAYLVSKGIEKNRVYTEGKGEKQPIADNKTKEGRAKNRRVEIEVVGTRAN
>Mature_219_residues
MKKLNKVAMLLASAVLATSAGAQVKAADGGKVIDNWQNGTGELVWKNGTNELCWRDANWTPATAAAGCDGALVAQAPAPA
PAAAPAPAAPPAPTPAPAAPVANKVTYAADAFFDFDKSVLKPEGKAKLDDLVSKVKNVNLEVIIAVGHTDSIGTDAYNQK
LSVRRAEAVKAYLVSKGIEKNRVYTEGKGEKQPIADNKTKEGRAKNRRVEIEVVGTRAN

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=125, Percent_Identity=40.8, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI48994946, Length=101, Percent_Identity=38.6138613861386, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788957, Length=96, Percent_Identity=38.5416666666667, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22926; Mature: 22926

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLNKVAMLLASAVLATSAGAQVKAADGGKVIDNWQNGTGELVWKNGTNELCWRDANWT
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCEEEECCCCC
PATAAAGCDGALVAQAPAPAPAAAPAPAAPPAPTPAPAAPVANKVTYAADAFFDFDKSVL
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCHHHH
KPEGKAKLDDLVSKVKNVNLEVIIAVGHTDSIGTDAYNQKLSVRRAEAVKAYLVSKGIEK
CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
NRVYTEGKGEKQPIADNKTKEGRAKNRRVEIEVVGTRAN
CEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MKKLNKVAMLLASAVLATSAGAQVKAADGGKVIDNWQNGTGELVWKNGTNELCWRDANWT
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCEEEECCCCC
PATAAAGCDGALVAQAPAPAPAAAPAPAAPPAPTPAPAAPVANKVTYAADAFFDFDKSVL
CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCHHHH
KPEGKAKLDDLVSKVKNVNLEVIIAVGHTDSIGTDAYNQKLSVRRAEAVKAYLVSKGIEK
CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
NRVYTEGKGEKQPIADNKTKEGRAKNRRVEIEVVGTRAN
CEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]