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The map label for this gene is qseB [H]

Identifier: 120611930

GI number: 120611930

Start: 3618749

End: 3619441

Strand: Direct

Name: qseB [H]

Synonym: Aave_3274

Alternate gene names: 120611930

Gene position: 3618749-3619441 (Clockwise)

Preceding gene: 120611924

Following gene: 120611931

Centisome position: 67.61

GC content: 72.01

Gene sequence:

>693_bases
ATGCGCATCCTCCTGGTGGAAGACGATCCCGTCCTGAGCCGCACCATGGCGCAGGGACTCGAACGCGCAGGCCACCGGGT
CGAACTCGCCCAGAACGTGGAAGATGCCCGGCACTGGTGGGCCGTGCAGCCCTTCGATGCCGTGCTGCTGGACATCAACC
TGCCCCATGGCCCGCAGGCGCGCAGCGGCCTGGGCAACGGCCTGGCCGCGCTGCGCAGCGCGCGCGCGCGGGGGGACCGC
ACGCCGGTGCTCGTGCTCAGCGCCCGCGACAGCACCGAAGAACGCATCGCCGGCCTGGACGCGGGCGCCGACGACTATCT
GGGCAAGCCGTACGAGCTCAAGGAAGTGGAAGCCCGCCTGCGCGCGCTGGCGCGCCGTACCACCGGCTCCGGCGACCTCG
TCACCGTCGGCCGGCTGCAGCTGGACCGGCAGGCGCGGCGCTGCAGCGTGGACGCACAGGCGCTGGAGCTGCCGGCGCGC
GAGTTCGAACTGCTCTGGGAACTGATGACGCCGCCAGGGCGCGTGCTGAGCAAGAGCGATCTGTCGCAGCGCCTTTCCGA
TGGGGGCGAGGCGCTGGGCGACAACGCGCTGGAATCCTTCGTCTCGCGCCTGCGCCGCAAGCTGGCCGGCAGCGGCGCGG
TCATCCGCACGCTGCGGGGCCTGGGCTACACCCTCGAGGAAGATGCCTCCTGA

Upstream 100 bases:

>100_bases
GTGGCTGGGGTATGCTGGCCATGGCACTATTGCCACCCAACCTGATCGCCGGCTGACCCTGCCCGTGCGTATTTCCACGT
AGCCCTGCCCTGTTTCCGCG

Downstream 100 bases:

>100_bases
CGCGCGCACCGCCGGCAAACCGGCGCTGCGCCAGCGCATCGGCCGCCACGTGCTGCTGTCGCTGCTGCTCATCTGGGGCC
TGGGCAGCGCCGTCGTGCTC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRILLVEDDPVLSRTMAQGLERAGHRVELAQNVEDARHWWAVQPFDAVLLDINLPHGPQARSGLGNGLAALRSARARGDR
TPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARLRALARRTTGSGDLVTVGRLQLDRQARRCSVDAQALELPAR
EFELLWELMTPPGRVLSKSDLSQRLSDGGEALGDNALESFVSRLRRKLAGSGAVIRTLRGLGYTLEEDAS

Sequences:

>Translated_230_residues
MRILLVEDDPVLSRTMAQGLERAGHRVELAQNVEDARHWWAVQPFDAVLLDINLPHGPQARSGLGNGLAALRSARARGDR
TPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARLRALARRTTGSGDLVTVGRLQLDRQARRCSVDAQALELPAR
EFELLWELMTPPGRVLSKSDLSQRLSDGGEALGDNALESFVSRLRRKLAGSGAVIRTLRGLGYTLEEDAS
>Mature_230_residues
MRILLVEDDPVLSRTMAQGLERAGHRVELAQNVEDARHWWAVQPFDAVLLDINLPHGPQARSGLGNGLAALRSARARGDR
TPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARLRALARRTTGSGDLVTVGRLQLDRQARRCSVDAQALELPAR
EFELLWELMTPPGRVLSKSDLSQRLSDGGEALGDNALESFVSRLRRKLAGSGAVIRTLRGLGYTLEEDAS

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=228, Percent_Identity=41.6666666666667, Blast_Score=146, Evalue=9e-37,
Organism=Escherichia coli, GI1787375, Length=229, Percent_Identity=31.8777292576419, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1786784, Length=232, Percent_Identity=33.1896551724138, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1790552, Length=226, Percent_Identity=34.5132743362832, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI87082012, Length=229, Percent_Identity=31.0043668122271, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788394, Length=235, Percent_Identity=32.3404255319149, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786599, Length=226, Percent_Identity=32.3008849557522, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786911, Length=227, Percent_Identity=33.4801762114537, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI2367329, Length=236, Percent_Identity=35.1694915254237, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1790860, Length=233, Percent_Identity=31.3304721030043, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789809, Length=241, Percent_Identity=28.6307053941909, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787229, Length=244, Percent_Identity=29.9180327868852, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790863, Length=235, Percent_Identity=26.3829787234043, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788550, Length=116, Percent_Identity=32.7586206896552, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693140, Length=237, Percent_Identity=26.5822784810127, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25156; Mature: 25156

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLVEDDPVLSRTMAQGLERAGHRVELAQNVEDARHWWAVQPFDAVLLDINLPHGPQA
CEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCH
RSGLGNGLAALRSARARGDRTPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARL
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCHHHCCCCCHHHHHHHHH
RALARRTTGSGDLVTVGRLQLDRQARRCSVDAQALELPAREFELLWELMTPPGRVLSKSD
HHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
LSQRLSDGGEALGDNALESFVSRLRRKLAGSGAVIRTLRGLGYTLEEDAS
HHHHHHCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRILLVEDDPVLSRTMAQGLERAGHRVELAQNVEDARHWWAVQPFDAVLLDINLPHGPQA
CEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCH
RSGLGNGLAALRSARARGDRTPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARL
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCHHHCCCCCHHHHHHHHH
RALARRTTGSGDLVTVGRLQLDRQARRCSVDAQALELPAREFELLWELMTPPGRVLSKSD
HHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
LSQRLSDGGEALGDNALESFVSRLRRKLAGSGAVIRTLRGLGYTLEEDAS
HHHHHHCCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]